BAC Information

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BAC

Clone NameMSMg01-336G23
Chromosome3 (Build37)
Map Location 63,334,169 - 63,334,646
singlet/doubletsinglet
Overlap genenone
Upstream geneGpr149, LOC676984, LOC666967, Mme
Downstream genePlch1, LOC100040836, E130311K13Rik, Slc33a1, Gmps, LOC670032, EG56544, 4930518C23Rik, LOC380739, EG637004, EG667031, EG637053, LOC672951, EG639869, EG667060
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-336G23.T7 (MSMg01no336_g23.b1)MSMg01-336G23.TJ (MSMg01no336_g23.g1)
ACCAG451454AG451455
length758540
length of high quality
(start - end)		486 (37 - 522)---
definitionCHROMAT_FILE: MSMg01no336_g23.b1 PHD_FILE: MSMg01no336_g23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:24:29 2005CHROMAT_FILE: MSMg01no336_g23.g1 PHD_FILE: MSMg01no336_g23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:24:30 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGGAATTC
CATATTTACTAGGAAAATAAAAACAACTTTGTGTCATATATGAACATGTT
GTATATGTGTATGTGTCAAATTTTCCGAGGATCTTTTTAACATAAAGTCT
AGTGTGTTTGCTAAATTTTCTAATTCTCATATATCATAGTACTAAAAATT
CAAAATCTTTAAAGACATTAGCAATGTCAGTCAACTATCTCTTTGGACAT
GATTAAAAATGGATAAAAGTTAATTGACAATCAGAAAAACACGTTACTAT
TCAGAAAACAATGGCTTTCCCTATACAGTGCAGAGCATGTGTGCTTCAGT
TGAAATTAACTAGACAAGTCTAAGCTGCCTCTTTGATAGTTTCAGTTCTA
TTTTGTTTTGTTCTCATGGTCATGATCTAAATCATAGTAACGAAGAATTA
AATAATTTCATCACCAAAATAATCCAATACATATATGTGTAGTGACTGTC
ACAGTTTGTACATGAACTGTCCCCCACAGACACATGTGTTTGAACAGTTG
GTTCCCAGATGGCGACACTGTGGGAAATAGATGTAGCTTTTGGAGATGGA
GGCTAGCTAGCAGACATGGGACTTTTGGGAAAGGCTTTCTTATTTCAGCC
CAACCCCAAGTTTTTAACAAGGCCTCTTGTTTTTACCCCTGGCGGAAGGG
GAAAGAAATAACTTCCGGGGCCTATGGCCTGAACACATTCCCTCCTTTCC
TTGGGGGG

NNNAAGATGTATGGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCTTTTTATTTTGGCAGAAATAAGTTTTTC
TTTTTAAAAAAAAAAANNNCGGTGTGGGTGGNNAAGAAGGNGGGGGTNTN
NNCAAGGTTTCTCCTCTTTTAAAGTTTTTAAAAATTGTGGGGTGGGACCN
CAAANNATCTTTTTTTAGAGAGAAAAATATTTTTTTTTTTTTGCNATAAA
TTTGTGTGTGGGGAAAAAAAAAACCCTTTTTTTTTTTAAAAGGGGGGGCG
GGAGATTTTTTTTTGTACCTTCCCCCCCCCAAAAGAAATGAAGGGGGGGT
TGTTTTTTGGNNNTTTGCTTATGTNNCTNNNNNNGTGGTGGTGTGGNNNN
NNNNNGGGGGGTTTTTTTTTTAAAAAANAAAAAAAAATTTTGTTTTATTA
CAATTTAAATTTTTNNNGGGGNGGGGGGGGGGTTCCTTTTTAGGGAGGGT
GGNNGNTTTTTGTTTTTCTTTTTTTTTTNTTGTTTGGTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no336_g23.b1 MSMg01no336_g23.b1 CHROMAT_FILE:
MSMg01no336_g23.b1 PHD_FILE: MSMg01no336_g23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:24:29 2005
         (486 letters)



>mm_chr3_63333961_63334846
          Length = 886

 Score =  924 bits (478), Expect = 0.0
 Identities = 478/478 (100%)
 Strand = Plus / Plus

                                                                       
Query: 9   gaattccatatttactaggaaaataaaaacaactttgtgtcatatatgaacatgttgtat 68
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 gaattccatatttactaggaaaataaaaacaactttgtgtcatatatgaacatgttgtat 268

                                                                       
Query: 69  atgtgtatgtgtcaaattttccgaggatctttttaacataaagtctagtgtgtttgctaa 128
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 atgtgtatgtgtcaaattttccgaggatctttttaacataaagtctagtgtgtttgctaa 328

                                                                       
Query: 129 attttctaattctcatatatcatagtactaaaaattcaaaatctttaaagacattagcaa 188
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 attttctaattctcatatatcatagtactaaaaattcaaaatctttaaagacattagcaa 388

                                                                       
Query: 189 tgtcagtcaactatctctttggacatgattaaaaatggataaaagttaattgacaatcag 248
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 tgtcagtcaactatctctttggacatgattaaaaatggataaaagttaattgacaatcag 448

                                                                       
Query: 249 aaaaacacgttactattcagaaaacaatggctttccctatacagtgcagagcatgtgtgc 308
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 aaaaacacgttactattcagaaaacaatggctttccctatacagtgcagagcatgtgtgc 508

                                                                       
Query: 309 ttcagttgaaattaactagacaagtctaagctgcctctttgatagtttcagttctatttt 368
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 ttcagttgaaattaactagacaagtctaagctgcctctttgatagtttcagttctatttt 568

                                                                       
Query: 369 gttttgttctcatggtcatgatctaaatcatagtaacgaagaattaaataatttcatcac 428
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 gttttgttctcatggtcatgatctaaatcatagtaacgaagaattaaataatttcatcac 628

                                                                     
Query: 429 caaaataatccaatacatatatgtgtagtgactgtcacagtttgtacatgaactgtcc 486
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 caaaataatccaatacatatatgtgtagtgactgtcacagtttgtacatgaactgtcc 686


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 486
Length of database: 886
Length adjustment: 10
Effective length of query: 476
Effective length of database: 876
Effective search space:   416976
Effective search space used:   416976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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