Query= MSMg01no336_l12.b1 MSMg01no336_l12.b1 CHROMAT_FILE:
MSMg01no336_l12.b1 PHD_FILE: MSMg01no336_l12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:24:51 2005
(509 letters)
>mm_chr3_73200245_73201156
Length = 912
Score = 948 bits (490), Expect = 0.0
Identities = 503/508 (99%), Gaps = 3/508 (0%)
Strand = Plus / Plus
Query: 5 gaattctttcttacca-cttctgggagtctgtggttggtactttgaaactgaactctgct 63
|||||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 205 gaattctttcttacaaacttctgggagtctgtggctggtactttgaaactgaactctgct 264
Query: 64 gttgctcctagatactttgaaatcttaaaagaaagaggagaactcacagtaagtcttgtg 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gttgctcctagatactttgaaatcttaaaagaaagaggagaactcacagtaagtcttgtg 324
Query: 124 atatttcaaaggaagtgaaaagattttgtttctaaatagaagtaacggatatatctttag 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atatttcaaaggaagtgaaaagattttgtttctaaatagaagtaacggatatatctttag 384
Query: 184 aaaaaaatccttttattctagaaaaaaa--tcacttaaatgggctatataactgggaaga 241
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 385 aaaaaaatccttttattctagaaaaaaaaatcacttaaatgggctatataactgggaaga 444
Query: 242 gaaagcagattcttatatcagaaaagctattttagactcttaactgtaagaggaggcaaa 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gaaagcagattcttatatcagaaaagctattttagactcttaactgtaagaggaggcaaa 504
Query: 302 aaggctttgtataagaatggcagtatagtcactgtataacatctttagagacagacatta 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aaggctttgtataagaatggcagtatagtcactgtataacatctttagagacagacatta 564
Query: 362 aagcttgttgctcttgttgataggttttggtgtggctgttctagaaaaccacagcctgtt 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aagcttgttgctcttgttgataggttttggtgtggctgttctagaaaaccacagcctgtt 624
Query: 422 attcagagaattctaagtccttgagatgagaaattagaagctggatgtcaaaaggcaaag 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 attcagagaattctaagtccttgagatgagaaattagaagctggatgtcaaaaggcaaag 684
Query: 482 agtggttttcctgagagtcctttcaaga 509
||||||||||||||||||||||||||||
Sbjct: 685 agtggttttcctgagagtcctttcaaga 712
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 912
Length adjustment: 10
Effective length of query: 499
Effective length of database: 902
Effective search space: 450098
Effective search space used: 450098
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no336_l12.g1 MSMg01no336_l12.g1 CHROMAT_FILE:
MSMg01no336_l12.g1 PHD_FILE: MSMg01no336_l12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:24:52 2005
(532 letters)
>mm_chr3_73379679_73380610
Length = 932
Score = 739 bits (382), Expect = 0.0
Identities = 391/394 (99%)
Strand = Plus / Minus
Query: 139 catttgcctttcacaagcttttcagtttgtgaggtctcatttattaattgttaatcttag 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 932 catttgcctttcacaagcttttcagtttgtgaggtctcatttattaattgttaatcttag 873
Query: 199 tagattttcaaattctgtaggctggcgtttgcccaattaaaagtgtcctttgccttacag 258
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 872 tagattttcaaattctgtaggctggcatttgcccaattaaaagtgtcctttgccttacag 813
Query: 259 aagcttttcagtttgtgctgtccaacttatttattaattgttcatcttagtgactgagct 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 812 aagcttttcagtttgtgctgtccaacttatttattaattgttcatcttagtgactgagct 753
Query: 319 ggcagtgttctatttgggaacttgttacataaatctctttgactggggctgtagagttgg 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 ggcagtgttctatttgggaacttgttacataaatctctttgactggggctgtagagttgg 693
Query: 379 attatcaataaagagaactcgctcttgctctttcagtggactcagactgagtattttttg 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 attatcaataaagagaactcgctcttgctctttcagtggactcagactgagtattttttg 633
Query: 439 tttccccagaaactgcatggcagcttacctttgtctccaactccattactagggaatctg 498
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct: 632 tttccccagaaactgcatggtagcttacctttgtctccaactccattgctagggaatctg 573
Query: 499 atcttctcactgtgcactgcttgtatgtggtgca 532
||||||||||||||||||||||||||||||||||
Sbjct: 572 atcttctcactgtgcactgcttgtatgtggtgca 539
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 932
Length adjustment: 10
Effective length of query: 522
Effective length of database: 922
Effective search space: 481284
Effective search space used: 481284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
