Query= MSMg01no336_p12.b1 MSMg01no336_p12.b1 CHROMAT_FILE:
MSMg01no336_p12.b1 PHD_FILE: MSMg01no336_p12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:25:11 2005
(508 letters)
>mm_chr3_117628959_117629865
Length = 907
Score = 899 bits (465), Expect = 0.0
Identities = 495/505 (98%), Gaps = 3/505 (0%)
Strand = Plus / Plus
Query: 5 gaattcacaactgcagtttcaagtgtatctaatacttcttagaatacatgaactcttggg 64
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacaacagtagtttcaagtgtatctaatacttcttagaatacatgaactcttggg 264
Query: 65 tgctgtgttttcctgctttataggcaagcatcttcaggcatataacctaattttcttgat 124
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgctgt-ttttcctgctttataggcaagcatcttcaggcatataacctaattttcttgat 323
Query: 125 ccattccttcatctgtagaactgagggattaaagtgtatgatttcagaggtacgatctcc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ccattccttcatctgtagaactgagggattaaagtgtatgatttcagaggtacgatctcc 383
Query: 185 acaattaccctaatgcctccattggcttcctgtgaatgctactttttgaatagct-acaa 243
||| ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct: 384 acagttaccctaatgcctccattggcttcctgtgaatgctactttttgaatag-tgacaa 442
Query: 244 tcaaatatagaatatcaacaaacttgaaatctatcaagatccagaagattaagaccagtg 303
||||||| |||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct: 443 tcaaatacagaatatcaacaaacttgaaatctatcaggatccagaagattaagatcagtg 502
Query: 304 agtttatggtggtgaagatccagtttatcaacaaatcaatatcactgtcattttcctgtc 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 agtttatggtggtgaagatccagtttatcaacaaatcaatatcactgtcattttcctgtc 562
Query: 364 ttcaaaatgcagccctctacatcaagagaatgactgagaagtctgtttagtggaaagcac 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ttcaaaatgcagccctctacatcaagagaatgactgagaagtctgtttagtggaaagcac 622
Query: 424 tttaagaaacacttttctagtgagaacagcccaagaaagacaaagacagaaaaataatac 483
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 623 tttaagaaacacttttctagtgagaacagcccaagaaagacaaagacaggaaaataatac 682
Query: 484 tgacacaactttcaaatctgacctc 508
|||||||||||||||||||||||||
Sbjct: 683 tgacacaactttcaaatctgacctc 707
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 907
Length adjustment: 10
Effective length of query: 498
Effective length of database: 897
Effective search space: 446706
Effective search space used: 446706
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no336_p12.g1 MSMg01no336_p12.g1 CHROMAT_FILE:
MSMg01no336_p12.g1 PHD_FILE: MSMg01no336_p12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:25:11 2005
(507 letters)
>mm_chr3_117864960_117865866
Length = 907
Score = 971 bits (502), Expect = 0.0
Identities = 505/506 (99%)
Strand = Plus / Minus
Query: 1 tactgtggtttgtgaggaaccgtgaatttgaatttggagcactagctctttaatcctccc 60
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 506 tactgtggtttgtgaggaaccgtgaatttgaatttggagcgctagctctttaatcctccc 447
Query: 61 tgccctctacgaagtacagcagcgatgagtgttatcgcatccattttctagaacgcactt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 tgccctctacgaagtacagcagcgatgagtgttatcgcatccattttctagaacgcactt 387
Query: 121 caatgtgttgccattgaaaccatctctgcagaggtgacttgcaggcctttgcctgtcctc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 caatgtgttgccattgaaaccatctctgcagaggtgacttgcaggcctttgcctgtcctc 327
Query: 181 cgccatatgttgcttccctgatataaattgaagtgggaagagaacagagagatctggatc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 cgccatatgttgcttccctgatataaattgaagtgggaagagaacagagagatctggatc 267
Query: 241 ccagagcttgtttgcatgaaattaagcctcatttggtcctttaggcatttaaaatggatg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 ccagagcttgtttgcatgaaattaagcctcatttggtcctttaggcatttaaaatggatg 207
Query: 301 gcttaatttcttccttccttccttcctttcttctctcttttctttccatttctttccttt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gcttaatttcttccttccttccttcctttcttctctcttttctttccatttctttccttt 147
Query: 361 tccttttccttttcttccttcttgcagagtgtggacatacacatgagatagtttgaaaaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146 tccttttccttttcttccttcttgcagagtgtggacatacacatgagatagtttgaaaaa 87
Query: 421 ctatttaaatactaaccatgtaactcattacataaagtttgtttttttaaaacgtttttt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86 ctatttaaatactaaccatgtaactcattacataaagtttgtttttttaaaacgtttttt 27
Query: 481 gatttagacatgcaaagtagtaggag 506
||||||||||||||||||||||||||
Sbjct: 26 gatttagacatgcaaagtagtaggag 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 907
Length adjustment: 10
Effective length of query: 497
Effective length of database: 897
Effective search space: 445809
Effective search space used: 445809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
