BAC Information

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BAC

Clone NameMSMg01-337J07
Chromosome3 (Build37)
Map Location 126,874,665 - 127,037,524
singlet/doubletdoublet
Overlap genenone
Upstream geneArsj, Camk2d, Ank2, LOC100043749
Downstream geneLOC100043361, LOC100043364, Larp7, 4930422G04Rik, Neurog2, Alpk1, T2bp, BC002199, 5730508B09Rik, LOC100043382, EG668828
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-337J07.T7 (MSMg01no337_j07.b1)MSMg01-337J07.TJ (MSMg01no337_j07.g1)
ACCAG452321AG452322
length749771
length of high quality
(start - end)		568 (71 - 638)501 (76 - 576)
definitionCHROMAT_FILE: MSMg01no337_j07.b1 PHD_FILE: MSMg01no337_j07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:26:00 2005CHROMAT_FILE: MSMg01no337_j07.g1 PHD_FILE: MSMg01no337_j07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:26:00 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(126,874,665 - 126,875,231)(127,037,024 - 127,037,524)
sequence
CAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATGCGCGGA
ATTCAATAGATATTGCACCAAAAAAGGGGCAAGGTAAGACACATATGTCA
TTGTTTGTCTAAAAAGAGGACAATGCCACACCCGTAAACAGTAGAAAACT
CTCAAACATCAGGTGTTTCTATCAGGATCTTGATCTCAATCATCACTAAC
CAACTAGCAAGAAGATCTAGGGATGGGTACTATATCAACCAAACTGCTGT
AATTTGTTTTGCGACAGGGACTCATGTATCTCAGGCTGGCCTGGAACTCA
CAACATAGCCTAGGATGATCATTATTTTGTATTCCTCCTGTCTGTATTCC
CTGAGTGCTGACACTGTAAGAGTGCACAGCCGTGCCTAATCTTACATGGC
TGGAGATCTTACCTGGGGCTTTCTGTATGCTAGGTAAGCCCTCTACCAAC
TGAACTACATCCTTAGGCCTGAAATAATGTTATTTTTTAAAATATTTATC
TTTTTAATAATGTCCCCTTTTCATCATCCTTCTACTAATTGATCAAAACA
GTTTTGATTTCATTATGAAATGAGGAGCTTCTTCATACAATGGGGAGTCT
TGACTTTGAAGTTTGCATCTCAACTTGAGCCCTATGTTGGGAGTATTTCC
TGCCCTTTGTGAGCTTCAATTTCTTTTACATTAATGGNGATATGTCTACT
AACAGAAACGACATGCTTGTATATGTGATAGGACTCCCCCAGTAGGAAA

GAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTCAGTTAGCAAACAAATCACATGA
ATCAATAGCGTTTGTTCTGATGTGGCTTGGGAGAGAAGAAGGGCTACTGG
GATGGAGAGGATGGAAGCCTGCCTTCTTGTCAGGTACCGAATGCTTGCAC
AACGGTGCTATATAGAACATTGTAATCGCCACCCAGCTCTGTGAAACCCA
GTGAGAGCAAACAGTGGAATGCCGTGCTGTCAATCAAGATTGTCTGTGAT
GCTCATGTCATGGCTCTGCACCTACTAGTACACCGAAGCAGAAGAGAGTG
CCCTACAGAGCTCTGGTGTGGAGCAGGAGTAGAGTTTTGCTTAGACCCAA
GGGATCTAGATACGGAAGACTCCATAGTCACCAGCCTCATTTACTTAATT
AAAATTTATTTTTAAAGTAGCTGGAAATTACAAGTGCACTTGTAATCCTA
GCAGTCAGGAAGCTGAGGCAAGTAGATTTTAACTTCAAGGCCAGCCGGGA
CTACATAGAGAGATCGTGACTCAAAAAATTAATTAAATTTTTAATATACG
CAAGGCACTATCATTAGAAGTGTAATATTTTAAAATATAGCTATTTTTTA
AAATACTTATTATTATGGGTGAGTGCCAAATTTTTCCTTGGCCCCCTTGT
TTTGTTACTTGCTTCCCCTGGGAATCTCCGCTTTTCTTTTTTCTTTTTCC
CTGCCCCCAGTATTTCCCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no337_j07.b1 MSMg01no337_j07.b1 CHROMAT_FILE:
MSMg01no337_j07.b1 PHD_FILE: MSMg01no337_j07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:26:00 2005
         (568 letters)



>mm_chr3_126874464_126875431
          Length = 968

 Score = 1019 bits (527), Expect = 0.0
 Identities = 557/567 (98%)
 Strand = Plus / Plus

                                                                       
Query: 2   aaaaggggcaaggtaagacacatatgtcattgtttgtctaaaaagaggacaatgccacac 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 aaaaggggcaaggtaagacacatatgtcattgtttgtctaaaaagaggacaatgccacac 261

                                                                       
Query: 62  ccgtaaacagtagaaaactctcaaacatcaggtgtttctatcaggatcttgatctcaatc 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 ccgtaaacagtagaaaactctcaaacatcaggtgtttctatcaggatcttgatctcaatc 321

                                                                       
Query: 122 atcactaaccaactagcaagaagatctagggatgggtactatatcaaccaaactgctgta 181
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 atcactaactaactagcaagaagatctagggatgggtactatatcaaccaaactgctgta 381

                                                                       
Query: 182 atttgttttgcgacagggactcatgtatctcaggctggcctggaactcacaacatagcct 241
           |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 atttgttttgagacagggtctcatgtatctcaggctggcctggaactcacaacatagcct 441

                                                                       
Query: 242 aggatgatcattattttgtattcctcctgtctgtattccctgagtgctgacactgtaaga 301
           || |||||||| |  ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 442 agaatgatcatgaacttgtattcctcctgtctgtatcccctgagtgctgacactgtaaga 501

                                                                       
Query: 302 gtgcacagccgtgcctaatcttacatggctggagatcttacctggggctttctgtatgct 361
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 502 gtgcacagccgtgcctaatcttacatggctggagatctaacctggggctttctgtatgct 561

                                                                       
Query: 362 aggtaagccctctaccaactgaactacatccttaggcctgaaataatgttattttttaaa 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 aggtaagccctctaccaactgaactacatccttaggcctgaaataatgttattttttaaa 621

                                                                       
Query: 422 atatttatctttttaataatgtccccttttcatcatccttctactaattgatcaaaacag 481
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 622 atatttatctttttaataatgttcccttttcatcatccttctactaattgatcaaaacag 681

                                                                       
Query: 482 ttttgatttcattatgaaatgaggagcttcttcatacaatggggagtcttgactttgaag 541
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 ttttgatttcattatgaaatgaggagcttcttcatacaatggggagtcttgactttgaag 741

                                      
Query: 542 tttgcatctcaacttgagccctatgtt 568
           |||||||||||||||||||||||||||
Sbjct: 742 tttgcatctcaacttgagccctatgtt 768


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 968
Length adjustment: 10
Effective length of query: 558
Effective length of database: 958
Effective search space:   534564
Effective search space used:   534564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no337_j07.g1 MSMg01no337_j07.g1 CHROMAT_FILE:
MSMg01no337_j07.g1 PHD_FILE: MSMg01no337_j07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:26:00 2005
         (501 letters)



>mm_chr3_127036956_127037856
          Length = 901

 Score =  946 bits (489), Expect = 0.0
 Identities = 498/501 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctcagttagcaaacaaatcacatgaatcaatagcgtttgttctgatgtggcttgggagag 60
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 569 ctcagttagcaaacaaatcacatgaatcaatagcatttgttctgatgtggcttgggagag 510

                                                                       
Query: 61  aagaagggctactgggatggagaggatggaagcctgccttcttgtcaggtaccgaatgct 120
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 aagatgggctactgggatggagaggatggaagcctgccttcttgtcaggtaccgaatgct 450

                                                                       
Query: 121 tgcacaacggtgctatatagaacattgtaatcgccacccagctctgtgaaacccagtgag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 tgcacaacggtgctatatagaacattgtaatcgccacccagctctgtgaaacccagtgag 390

                                                                       
Query: 181 agcaaacagtggaatgccgtgctgtcaatcaagattgtctgtgatgctcatgtcatggct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 agcaaacagtggaatgccgtgctgtcaatcaagattgtctgtgatgctcatgtcatggct 330

                                                                       
Query: 241 ctgcacctactagtacaccgaagcagaagagagtgccctacagagctctggtgtggagca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 ctgcacctactagtacaccgaagcagaagagagtgccctacagagctctggtgtggagca 270

                                                                       
Query: 301 ggagtagagttttgcttagacccaagggatctagatacggaagactccatagtcaccagc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 269 ggagtagagttttgcttagacccaagggatctagatacggaagactccatagtgaccagc 210

                                                                       
Query: 361 ctcatttacttaattaaaatttatttttaaagtagctggaaattacaagtgcacttgtaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 ctcatttacttaattaaaatttatttttaaagtagctggaaattacaagtgcacttgtaa 150

                                                                       
Query: 421 tcctagcagtcaggaagctgaggcaagtagattttaacttcaaggccagccgggactaca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 149 tcctagcagtcaggaagctgaggcaagtagattttaacttcaaggccagccgggactaca 90

                                
Query: 481 tagagagatcgtgactcaaaa 501
           |||||||||||||||||||||
Sbjct: 89  tagagagatcgtgactcaaaa 69


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 901
Length adjustment: 10
Effective length of query: 491
Effective length of database: 891
Effective search space:   437481
Effective search space used:   437481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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