BAC Information

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BAC

Clone NameMSMg01-337L04
Chromosome3 (Build37)
Map Location 126,295,338 - 126,295,530
singlet/doubletsinglet
Overlap genenone
Upstream geneNdst4, Ugt8a, Arsj
Downstream geneCamk2d, Ank2, LOC100043749, LOC100043361, LOC100043364, Larp7, 4930422G04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-337L04.T7 (MSMg01no337_l04.b1)MSMg01-337L04.TJ (MSMg01no337_l04.g1)
ACCAG452408AG452409
length690812
length of high quality
(start - end)
197 (45 - 241)---
definitionCHROMAT_FILE: MSMg01no337_l04.b1 PHD_FILE: MSMg01no337_l04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:26:09 2005CHROMAT_FILE: MSMg01no337_l04.g1 PHD_FILE: MSMg01no337_l04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:26:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTAATGACTTATTGTGATAACTATAGTGTAGCACTCAAACCTCACTA
GAGAAATTTCTTTTTTAAGAGTTAGTGATGAACACTGAAATCAAAACTGT
TCAAAGCACAGAGAGTAAATGAACAGGGAGTCCTCAGCCATAAATAGGTG
AGCCTATGTCATGTATATCACTCTCATTCCTCCCAAGGGCCNAAGTGGTC
NNATTGAAGAAAGACTAAGAGTGAGAGGCAGTGGATGACTTTAAGAACAG
TGGTCTTTGGATACAACAGGACAGTTGCACATATGAATTCACAGCAATTG
TGACAGCATGCAGTCACCTGTACAAGCTCAAACCACCCCAATCTTAACCC
AAAGGAAAGATTTGAATCAGCAGCCCCCCCCCCTATTGAGGAAAAATTGG
AAGTAAAAAACTTCCATGAAAAAAAAAAAGTTTAATTTCCCTTTAAGGGA
TGGGTTAAACCCCGGCCCCCGGGGAAGGGGCCCCCCCTTTCCAAAAAAAA
AAGGGGGGCACCCTAAAAGGGAAATTTTTGTAAGGGCGCCTTTTTAAAAA
GGGGGGAGGGACCAATTTTTTTTTATTCGGGGTTTTTTTTAAAAGGGGGA
AAAAATTCTCTTTTAAAAAAAAAAAAAGTCTTTCTAGAAG
ACCAGGCTTATGGGGTTGATAGGGGGAGGTAAGGAGTGGGTTCCCTCATT
AATATTTGGGGGACTATAAAAGGGGTTCTGGGGGAGAATACATAATAGTT
GAGCTTATCAAGGAAGAAGGAAGTAAATACGAATACTTTATCTTCACGCC
GTCCCCTTCATTCAGTGAGCGGAGGGTGTGGTTAGGATTGCGAGCGTCGC
TGGAGTGTAATGGAGGGTCCTTTGTAAACTAAAATAATTATCACTATTAG
GGTAGTGGAAATATATAGAAGACTGGGAAAATAGGAACAAGGCGTGGGGG
GAATGCCGAGAAAGGCTATACCTATTAACGGGTGGCACCTGGTGAAGTGT
GGATATATTTTTAATAGCCCACTAACATTAAGAACTAGTATTCTGCGCCT
AGATACACCCGAATTAGATATGATACAATGAACTGGTTGTTTATATCGAT
GTGCATCCGTCCATTGGTGTTTGTACACTACCGCTAGTGGATATAATAAA
AACACAATTCGTTCTTTCCAAAAAAAATACGTTATCCGCCTTCTCCTAGC
ATATAAATNNNNNNNTTTTTNNNNNNNNNGGGACTGAATNTTGGNNTAGN
NCGTANCGGNNNGCCNGTNGNNCGTTNGACNNCTAAGGCTCANACNTTNA
AGNNANTGATTNGCTTTGCNNATTGCGNACNNNNANGNCNNNNGATNGNG
TNCGNNNNANCATTTNAAGANNGCCTNNNGNAGTGNGATTACCGTAAGAA
AGTGNNCANNGANNTTNGGNNACTTGNNANNNNGNNTAACNGTCNNTAGC
NTNNGNAACTGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no337_l04.b1 MSMg01no337_l04.b1 CHROMAT_FILE:
MSMg01no337_l04.b1 PHD_FILE: MSMg01no337_l04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:26:09 2005
         (197 letters)



>mm_chr3_126295134_126295730
          Length = 597

 Score =  358 bits (185), Expect = e-103
 Identities = 191/193 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctaatgacttattgtgataactatagtgtagcactcaaacctcactagagaaatt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctaatgacttattgtgataactatagtgtagcactcaaacctcactagagaaatt 264

                                                                       
Query: 65  tcttttttaagagttagtgatgaacactgaaatcaaaactgttcaaagcacagagagtaa 124
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 265 tcttttttaagagttagtgatgaacactgaaatcaaaactcttcaaagcacagagagtaa 324

                                                                       
Query: 125 atgaacagggagtcctcagccataaataggtgagcctatgtcatgtatatcactctcatt 184
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atgaccagggagtcctcagccataaataggtgagcctatgtcatgtatatcactctcatt 384

                        
Query: 185 cctcccaagggcc 197
           |||||||||||||
Sbjct: 385 cctcccaagggcc 397


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 197
Length of database: 597
Length adjustment: 8
Effective length of query: 189
Effective length of database: 589
Effective search space:   111321
Effective search space used:   111321
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)