Query= MSMg01no337_n11.b1 MSMg01no337_n11.b1 CHROMAT_FILE:
MSMg01no337_n11.b1 PHD_FILE: MSMg01no337_n11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:26:20 2005
(554 letters)
>mm_chr3_59894646_59895599
Length = 954
Score = 951 bits (492), Expect = 0.0
Identities = 537/552 (97%), Gaps = 4/552 (0%)
Strand = Plus / Plus
Query: 5 gaattctccatgta-attttttttttctgtgaaatgtccaagtgaccacccttgccttta 63
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctccatg-acattttttttttctgtgaaatgtccaagtgaccacccttgccttta 263
Query: 64 atctctagagatctaaagcaagggttttgttcatttattttaattgagggtcatagtcga 123
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 264 atctctagagatctaaagcaagggttttgttcatttattttaattgagggtcatagtcaa 323
Query: 124 tatatgaaagggctgatctgatctgatgagagattattttacttcctgaaaaaaatacaa 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tatatgaaagggctgatctgatctgatgagagattattttacttcctgaaaaaaatacaa 383
Query: 184 g-ttttgccatacacttaatcattgagaattgagtttgaagttaatgtaaagaatgttaa 242
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gtttttgccatacacttaatcattgagaattgagtttgaagttaatgtaaagaatgttaa 443
Query: 243 cttcaaaatgtccatagaaagttgttttaagttaaaagtacaaatgtatgtgtttaaaaa 302
||| ||||||||||||||||||| |||||||||||| |||||| |||||||||||||||
Sbjct: 444 ctt-aaaatgtccatagaaagtttttttaagttaaatgtacaaccgtatgtgtttaaaaa 502
Query: 303 cccttcactccggttcacttgtggccaggtataaaatgtggatcacagtgaaggccagtg 362
||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 503 gccttcactctggttcacttgtggccaggtataaaatgtggatcacagtgaaggcgagtg 562
Query: 363 agagaactcatccttagatgtgataagccattgctgaagctgtggccatatctcacatgt 422
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct: 563 agagaactcatccttagacgtgataagccattgctgaagctgtggccatatctcacacgt 622
Query: 423 tgcacaagctacctgtggtgttcaaatgtatgacaaaggagatgataaacactatgtcag 482
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 tgcacaagctacctgcggtgttcaaatgtatgacaaaggagatgataaacactatgtcag 682
Query: 483 aaagttcttagatttttgtaagactaacagatacttttggaatcatgaccacggttaacc 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 aaagttcttagatttttgtaagactaacagatacttttggaatcatgaccacggttaacc 742
Query: 543 atttactacttc 554
||||||||||||
Sbjct: 743 atttactacttc 754
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 954
Length adjustment: 10
Effective length of query: 544
Effective length of database: 944
Effective search space: 513536
Effective search space used: 513536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no337_n11.g1 MSMg01no337_n11.g1 CHROMAT_FILE:
MSMg01no337_n11.g1 PHD_FILE: MSMg01no337_n11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:26:20 2005
(426 letters)
>mm_chr3_60082676_60083504
Length = 829
Score = 810 bits (419), Expect = 0.0
Identities = 426/429 (99%), Gaps = 3/429 (0%)
Strand = Plus / Minus
Query: 1 ttcttaattttgaaactggatatgcaaaaataagtatgttcaaactgtagaaacaatatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ttcttaattttgaaactggatatgcaaaaataagtatgttcaaactgtagaaacaatatg 742
Query: 61 gcttgtattcaatatagcaaacagtggaaagaaaaaaatataccttaagaatgagctatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gcttgtattcaatatagcaaacagtggaaagaaaaaaatataccttaagaatgagctatt 682
Query: 121 taggtaaattatgcaaaatacatattttttataaaaataaaattttaatatagtttcttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 taggtaaattatgcaaaatacatattttttataaaaataaaattttaatatagtttcttt 622
Query: 181 ttgatcctataatcaatgtccatgtacctcatcaactctgtcaaata--atct-aaagca 237
||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct: 621 ttgatcctataatcaatgtccatgtacctcatcaactctgtcaaataatatctaaaagca 562
Query: 238 aggtaaggctcaaggatattatctataataaatatgaaaatatacatttgtatatgttca 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aggtaaggctcaaggatattatctataataaatatgaaaatatacatttgtatatgttca 502
Query: 298 tgaattatttttgtacgaatgtgaagcttgagttggaataaagattcctttacaatctgt 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgaattatttttgtacgaatgtgaagcttgagttggaataaagattcctttacaatctgt 442
Query: 358 gcttttgtatagtttcagtttgctagctaactacatatatatgccttttccttattaatg 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcttttgtatagtttcagtttgctagctaactacatatatatgccttttccttattaatg 382
Query: 418 aaatgattt 426
|||||||||
Sbjct: 381 aaatgattt 373
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 426
Length of database: 829
Length adjustment: 9
Effective length of query: 417
Effective length of database: 820
Effective search space: 341940
Effective search space used: 341940
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
