BAC Information

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BAC

Clone NameMSMg01-340N04
Chromosome3 (Build37)
Map Location 38,204,692 - 38,392,979
singlet/doubletdoublet
Overlap geneLOC665838, Ankrd50, LOC100041378
Upstream geneCetn4, Bbs12, LOC100041328, Fgf2, LOC100040649, Nudt6, Spata5, LOC665778, Spry1, EG381438, LOC100038875, LOC100041338, EG626367, 4930556A17Rik, LOC665811, EG665821, LOC100041366, LOC100040785
Downstream geneLOC665855, LOC100040824, Fat4, LOC100041432, LOC100040853
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-340N04.T7 (MSMg01no340_n04.b1)MSMg01-340N04.TJ (MSMg01no340_n04.g1)
ACCAG454768AG454769
length738740
length of high quality
(start - end)		657 (45 - 701)577 (76 - 652)
definitionCHROMAT_FILE: MSMg01no340_n04.b1 PHD_FILE: MSMg01no340_n04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:29:55 2005CHROMAT_FILE: MSMg01no340_n04.g1 PHD_FILE: MSMg01no340_n04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:29:55 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,204,692 - 38,205,344)(38,392,403 - 38,392,979)
sequence
CTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTTGGTACCAGCTTACTTCTTAAAGGCTTCTTTATAGCCTATATTT
TTGAATCAACACAGGGAGAGACAACTAACGAAGTTTCCTCTCCTAGCTAA
ACAGTCCTTAATGTAAATCAGAACTCAAATACAAAGCAGTTCTTAATTAT
TAGGAAATCTTAGTAGAATTGGTCAACTTCTCCTGCAAATGGAACTCTTT
GTAGCTAAATAGAATGAATATCCTCTTGTGGATATTCTTCCTCGGAAAAT
GATGACTCTTGTTAGAAGCCACCACACATCAGGTAACCTTTGCTAGTACA
AACATGTCTTCTGTTTCTCTCTTTCTTCCCATTTAAAGCTATGTGCTGCT
TTAAGGACCATCTGTAGCACTCTTAACATTATCTCTCATTTACTCAGGTT
CTGCTCCAGTGGCTTGAAAAGACTCCATTAAACACCAAGGTATCTTCCTT
TTTAAAGCAAACACCAAACTAAAGGCTTGCTAGAAAGTTCCTCTGATGTT
TGACATGAGGCAGCCCTGGCACAAGGACTTCTTGTGCCTCTGCAAAGTGT
TGTTTAGAGTGTGACCCAGGAACATCACGGGTACAGGCTTCTAAGAAATA
CCAGAAGTAACCCTCGGGTTGGAAAAGCTATTTCTAGGAAGATTCCGAAA
GTGTAATATAACTTTATCTTAGGAAAGTTTCCCCTACC

CGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATTTGGGAGTGAGGGAGAGGGGTCA
TTCAAAAAAACACCTGGTATTAACTGGGGTGGCTGCATGTCTGCACTAAC
CAGGGAAAGCTCTGCTTTCTAACCAGGGAAAGTTCGAGTGAGAAAGCCCT
CAGCCAAAGTGGCAGCTTAAGAGGCAAGATGAACTCCAGAACATGTGTTC
TGAGGGTCAGAGGCTGTATATGTGCAGTGTGGCTCAGGCAGAGAATGCAC
ACAGTAGAACAAAGCACAGAAGTCACAAGGCAAATACTGGTGACAATGTT
GTAGAGGGACTGCTGCAGCAGGGACAGTTACAGAGTTAATAAGATGTCCC
TCTTTGCATATGCATATATGCATGGATTAATAAGATGCCCCTTTATGCAT
ATGCATAGATTTCAGTATTGGGTCTCAAAAGTTCTACTTTCTGCATTTCA
TTGTATTTCATATATTCATAAAATACCCAGTTGTGGTGAAATAAACAAAG
GTGAATCCACGGAACAAGGCACACTCAATCAAGATGGTGCTGAATGTGTG
GCTGACCTTTTTTCCGAGTCTATGCTACATTATAAACACGGACAATCTCC
TGGGGATGACAATGTCTCTGCTCTTCATTTCAAGTGGCGAGACTAGGGCC
TCTTGTTCCTTTTAAGATATTATTTTTCTTATGTTTGGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no340_n04.b1 MSMg01no340_n04.b1 CHROMAT_FILE:
MSMg01no340_n04.b1 PHD_FILE: MSMg01no340_n04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:55 2005
         (657 letters)



>mm_chr3_38204488_38205544
          Length = 1057

 Score = 1263 bits (653), Expect = 0.0
 Identities = 653/653 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccttggtaccagcttacttcttaaaggcttctttatagcctatatttttgaatca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccttggtaccagcttacttcttaaaggcttctttatagcctatatttttgaatca 264

                                                                       
Query: 65  acacagggagagacaactaacgaagtttcctctcctagctaaacagtccttaatgtaaat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 acacagggagagacaactaacgaagtttcctctcctagctaaacagtccttaatgtaaat 324

                                                                       
Query: 125 cagaactcaaatacaaagcagttcttaattattaggaaatcttagtagaattggtcaact 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cagaactcaaatacaaagcagttcttaattattaggaaatcttagtagaattggtcaact 384

                                                                       
Query: 185 tctcctgcaaatggaactctttgtagctaaatagaatgaatatcctcttgtggatattct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tctcctgcaaatggaactctttgtagctaaatagaatgaatatcctcttgtggatattct 444

                                                                       
Query: 245 tcctcggaaaatgatgactcttgttagaagccaccacacatcaggtaacctttgctagta 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tcctcggaaaatgatgactcttgttagaagccaccacacatcaggtaacctttgctagta 504

                                                                       
Query: 305 caaacatgtcttctgtttctctctttcttcccatttaaagctatgtgctgctttaaggac 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 caaacatgtcttctgtttctctctttcttcccatttaaagctatgtgctgctttaaggac 564

                                                                       
Query: 365 catctgtagcactcttaacattatctctcatttactcaggttctgctccagtggcttgaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 catctgtagcactcttaacattatctctcatttactcaggttctgctccagtggcttgaa 624

                                                                       
Query: 425 aagactccattaaacaccaaggtatcttcctttttaaagcaaacaccaaactaaaggctt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aagactccattaaacaccaaggtatcttcctttttaaagcaaacaccaaactaaaggctt 684

                                                                       
Query: 485 gctagaaagttcctctgatgtttgacatgaggcagccctggcacaaggacttcttgtgcc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gctagaaagttcctctgatgtttgacatgaggcagccctggcacaaggacttcttgtgcc 744

                                                                       
Query: 545 tctgcaaagtgttgtttagagtgtgacccaggaacatcacgggtacaggcttctaagaaa 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tctgcaaagtgttgtttagagtgtgacccaggaacatcacgggtacaggcttctaagaaa 804

                                                                
Query: 605 taccagaagtaaccctcgggttggaaaagctatttctaggaagattccgaaag 657
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 taccagaagtaaccctcgggttggaaaagctatttctaggaagattccgaaag 857


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1057
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1047
Effective search space:   677409
Effective search space used:   677409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no340_n04.g1 MSMg01no340_n04.g1 CHROMAT_FILE:
MSMg01no340_n04.g1 PHD_FILE: MSMg01no340_n04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:55 2005
         (577 letters)



>mm_chr3_38392203_38393179
          Length = 977

 Score = 1116 bits (577), Expect = 0.0
 Identities = 577/577 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   atttgggagtgagggagaggggtcattcaaaaaaacacctggtattaactggggtggctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 777 atttgggagtgagggagaggggtcattcaaaaaaacacctggtattaactggggtggctg 718

                                                                       
Query: 61  catgtctgcactaaccagggaaagctctgctttctaaccagggaaagttcgagtgagaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 catgtctgcactaaccagggaaagctctgctttctaaccagggaaagttcgagtgagaaa 658

                                                                       
Query: 121 gccctcagccaaagtggcagcttaagaggcaagatgaactccagaacatgtgttctgagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 gccctcagccaaagtggcagcttaagaggcaagatgaactccagaacatgtgttctgagg 598

                                                                       
Query: 181 gtcagaggctgtatatgtgcagtgtggctcaggcagagaatgcacacagtagaacaaagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 gtcagaggctgtatatgtgcagtgtggctcaggcagagaatgcacacagtagaacaaagc 538

                                                                       
Query: 241 acagaagtcacaaggcaaatactggtgacaatgttgtagagggactgctgcagcagggac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 acagaagtcacaaggcaaatactggtgacaatgttgtagagggactgctgcagcagggac 478

                                                                       
Query: 301 agttacagagttaataagatgtccctctttgcatatgcatatatgcatggattaataaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 agttacagagttaataagatgtccctctttgcatatgcatatatgcatggattaataaga 418

                                                                       
Query: 361 tgcccctttatgcatatgcatagatttcagtattgggtctcaaaagttctactttctgca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 tgcccctttatgcatatgcatagatttcagtattgggtctcaaaagttctactttctgca 358

                                                                       
Query: 421 tttcattgtatttcatatattcataaaatacccagttgtggtgaaataaacaaaggtgaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 tttcattgtatttcatatattcataaaatacccagttgtggtgaaataaacaaaggtgaa 298

                                                                       
Query: 481 tccacggaacaaggcacactcaatcaagatggtgctgaatgtgtggctgaccttttttcc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 tccacggaacaaggcacactcaatcaagatggtgctgaatgtgtggctgaccttttttcc 238

                                                
Query: 541 gagtctatgctacattataaacacggacaatctcctg 577
           |||||||||||||||||||||||||||||||||||||
Sbjct: 237 gagtctatgctacattataaacacggacaatctcctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 977
Length adjustment: 10
Effective length of query: 567
Effective length of database: 967
Effective search space:   548289
Effective search space used:   548289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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