TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCGAAAAAA
CAAAAAACAAACAAACAAACAAAAATAAAAAAATAAAAAGGAAATCTATA
CTGTGGACACTTCAATCCTTAGAAGGGGGAACAAAATACCCATGAAAGAA
GTTACAGAGACAAAGTTTGGAGCAGAGACTGAAGGAATGACCATCTAGAG
ACTGCCCGACGTGAGCATCTATCCCATATACAACCACCAAAACCAGAAAC
TGTTGTTAATGCCAAGAAGAGTTTGCTGACATGAGCCTGATATAGCTGTC
TCCTGAGAAGCTCCGTCAGTGCCTGACAAATGCAGAAGTGGATGCTCACA
GCCATTCATTGGACAGATCCCAATGAAGGATCTAGAGAAAGTACCCAAGG
ACCTGAAGGGGTTTGTAGCCCCATCGGAGGAACAACAATATGAACTAACC
AGTACCCCCAGAGCTCCCTGGGACTAAACCATCAATCAAAGAAAACATAT
GGTGGGACTCACAGCTCTAGCTGCATAATTAGCAGAGGATAGCCTAGTCG
GTCATCAGTGGGAAGAGAAGCCCTTGGTCCTTCGAAGGTTCTATACCCAG
TAAATGGGAAAGCCAGGGCCAAGAAACAGGAATGAGTGAGTTGGTGAGCA
GGTTGAGGGTGAGGGGATAGGAGAATTTCCATGGG

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAACCATCTCTCCATGGTGTGGGAGAGA
AAAAGAGAGGCTTGACAGTTTTCATTGTCAGGGAAGGGTTGTTCTACATA
GTTCTTAGTATAAAAATGAAGATTCACTTCCCATAGTGAATTTAACATGT
GTCTTTCCTTGAATTAAGGTGACAGTGTTGAAAAGCAGAATGTGTTGAGG
GGTGGAAAAGACATGTTTTTTTTTTTAAACTCAAAAGTCAAATACTCAAT
ACAGACCCTCTTTGGAAAACAAAATAATATGTCTACCACAGATCATTCTC
CAGGCTGGACCTTTATGAAGGTAGTGTGACAGAAAAGCATATGGTTTTAT
GTACTTGTTCATAGAGAGATTCACATAAATAACAAACCAGTGGATATGTT
TTAAATATATAAACTTTCAAAGTATAAGCCAAAAGAAGGAGATTCAAATA
GGTGATATCTTTGATTTATTATTAAAGTTGACTTACAGAATTATGAACTG
TTTATATATATGTCTGGAAGCTCTCTTTGGCAAATTTACAGTGAAAGAAA
CTTCTAACCTTGAAGTTAAGGAAACAGCTCATCCTGTTCAATTTCATCAA
GAGAAAAACCAAACCAAACCAAACCAAACCAAACCAAACCAAATCAAACC
AAACCAATAACAAAACACAACCAATTCATGTTTTCN

Query= MSMg01no340_p08.g1 MSMg01no340_p08.g1 CHROMAT_FILE:
MSMg01no340_p08.g1 PHD_FILE: MSMg01no340_p08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:30:05 2005
         (582 letters)



>mm_chr3_6796422_6797408
          Length = 987

 Score = 1023 bits (529), Expect = 0.0
 Identities = 571/587 (97%), Gaps = 5/587 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaccatctctccatggtgtgggagagaaaaagagaggcttgacagttttcattgtcaggg 60
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 787 aaccatctctccatgatgtgggagagaaaaagagaggcttgacagttttcattgtcaggg 728

                                                                       
Query: 61  aagggttgttctacatagttcttagtataaaaatgaagattcacttcccatagtgaattt 120
           ||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 727 aagggttgttctatatagttcttagtacaaaaatgaagattcacttcccatagtgaattt 668

                                                                       
Query: 121 aacatgtgtctttccttgaattaaggtgacagtgttgaaaagcagaatgtgttgaggggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 aacatgtgtctttccttgaattaaggtgacagtgttgaaaagcagaatgtgttgaggggt 608

                                                                       
Query: 181 ggaaaagacatg----tttttttttttaaactcaaaagtcaaatactcaatacagaccct 236
           ||||||||||||    ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 607 ggaaaagacatggatttttttttttttaaactcaaaagtcagatactcaatacagaccct 548

                                                                       
Query: 237 ctttggaaaacaaaataatatgtctaccacagatcattctccaggctggacctttatgaa 296
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 ctttggaaaacaaaataatatgtctaccacagatcattctccaggctggacctttatgaa 488

                                                                       
Query: 297 ggtagtgtgacagaaaagcatatggttttatgtacttgttcatagagagattcacataaa 356
           ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 487 ggtagcgtgacagaaaagcatatcgttttatgtacttgttcatagagagattcacataaa 428

                                                                       
Query: 357 taacaaaccagtggatatgttttaaatatataaactttcaaa-gtataagccaaaagaag 415
           |||||||||||||||||| |||||||| |||||||||||||| |||||||||||||||||
Sbjct: 427 taacaaaccagtggatattttttaaatgtataaactttcaaaagtataagccaaaagaag 368

                                                                       
Query: 416 gagattcaaataggtgatatctttgatttattattaaagttgacttacagaattatgaac 475
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 367 gagattcaaataggtgatatctttgatttattattaaagttgacttacagaattatggac 308

                                                                       
Query: 476 tgtttatatatatgtctggaagctctctttggcaaatttacagtgaaagaaacttctaac 535
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 tatttatatatatgtctggaagctctctttggcaaatttacagtgaaagaaacttctaac 248

                                                          
Query: 536 cttgaagttaaggaaacagctcatcctgttcaatttcatcaagagaa 582
           |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 247 cttgaagttaaggaaatagctcatcctgttcaatttcatcaagagaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 582
Length of database: 987
Length adjustment: 10
Effective length of query: 572
Effective length of database: 977
Effective search space:   558844
Effective search space used:   558844
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)