Query= MSMg01no340_p19.b1 MSMg01no340_p19.b1 CHROMAT_FILE:
MSMg01no340_p19.b1 PHD_FILE: MSMg01no340_p19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:30:06 2005
(524 letters)
>mm_chr3_131450561_131451484
Length = 924
Score = 690 bits (357), Expect = 0.0
Identities = 457/521 (87%), Gaps = 53/521 (10%)
Strand = Plus / Plus
Query: 5 gaattcatgttcatcgattcacttttcctatttactcttgatgttaatattaattgctca 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatgttcatcgattcacttttcctatttactcttgatgttaatattaattgctca 264
Query: 65 gcttcaactcaatgagaacttgttaggagagaaacaaagctaagaacacagtagaaaggt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gcttcaactcaatgagaacttgttaggagagaaacaaagctaagaacacagtagaaaggt 324
Query: 125 gttaagtttcaaaccctgagcaagtggctgaggtgtctatttaacatatcaaagcagacc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gttaagtttcaaaccctgagcaagtggctgaggtgtctatttaacatatcaaagcagacc 384
Query: 185 tggccctccaggttcttccagcatcccttaatccctacatttttttaaatttatttttta 244
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tggccctccaggttctcccagcatcccttaatccctacatttttttaaatttatttttta 444
Query: 245 ttaggtattttcctagtttacattttctttttttttccattttttattaggtatttaact 304
||||||||||||||||||||||||||| ||
Sbjct: 445 ttaggtattttcctagtttacattttc-----------------------------aa-- 473
Query: 305 catttacatttccagtgctataccaaaagtcccccatatccacccacccccactcccctg 364
|||||| |||||||||||||||| |||||| |||| ||||||
Sbjct: 474 ---------------tgctatcccaaaagtcccccatacccaccc---cccaatccccta 515
Query: 365 cccatcc-actccccctttttggccctggtgttcccctgtactggggcatataaagtttg 423
|||| || ||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 516 ccca-cctactccccctttttggccctggggttcccctgtactggggcatataaagtttg 574
Query: 424 caagtccaatgggcctctctttccagtgatggccgactaggccatcttttgatatatatg 483
|||||||||||||||||||||| ||||||||||| |||||||| |||||||||| |||||
Sbjct: 575 caagtccaatgggcctctctttgcagtgatggccaactaggccgtcttttgatacatatg 634
Query: 484 cagctagag-tcaagagctccggggtactggttagctcata 523
||||||||| | ||||||||||||||||||||||| |||||
Sbjct: 635 cagctagagat-aagagctccggggtactggttagttcata 674
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 524
Length of database: 924
Length adjustment: 10
Effective length of query: 514
Effective length of database: 914
Effective search space: 469796
Effective search space used: 469796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no340_p19.g1 MSMg01no340_p19.g1 CHROMAT_FILE:
MSMg01no340_p19.g1 PHD_FILE: MSMg01no340_p19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:30:07 2005
(476 letters)
>mm_chr3_131648037_131648912
Length = 876
Score = 586 bits (303), Expect = e-171
Identities = 345/377 (91%), Gaps = 28/377 (7%)
Strand = Plus / Minus
Query: 1 cttttttaataattaaaaatgcaaatgtggagggacatgggatgataaggcattgattaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 cttttttaataattaaaaatgcaaatgtggagggacatgggatgataaggcattgattaa 318
Query: 61 cctcactttctccctccatgtaaaacttactagccttcaactcccaacgttctggaccca 120
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 317 cctcactttctccctccatgtaaaacttactagccttcaactcccaatgttctggaccca 258
Query: 121 cgaaaatccataaagattgagtacattcagagtttttcccacattcattcatttatttgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 cgaaaatccataaagattgagtacattcagagtttttcccacattcattcatttatttgt 198
Query: 181 gtgtgtgtgtgtgtgtgt----------------------------ctgtatgtgcgcgc 212
|||||||||||||||||| ||||||| |||||
Sbjct: 197 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtatgcgcgcgt 138
Query: 213 acgcgtgcgtgcgtccatgcatgtgtgtgcgggtgtgcgtatttggaatagcatgcatat 272
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 137 acgcgtgcgtgcgtccatgcgtgtgtgtgcgggtgtgcgtatttggaatagcatgcatat 78
Query: 273 ggaaggcagagcttcttatggaagtaagaagctttctctccttccatcgcagagactgca 332
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77 ggaaggcagagcttcttatggaagtaagaagctttctctccttccatcgcagagactgca 18
Query: 333 agagtgtaattcaagac 349
|||||||||||||||||
Sbjct: 17 agagtgtaattcaagac 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 476
Length of database: 876
Length adjustment: 10
Effective length of query: 466
Effective length of database: 866
Effective search space: 403556
Effective search space used: 403556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
