Query= MSMg01no341_a10.b1 MSMg01no341_a10.b1 CHROMAT_FILE:
MSMg01no341_a10.b1 PHD_FILE: MSMg01no341_a10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:30:09 2005
(473 letters)
>mm_chr3_30702204_30703076
Length = 873
Score = 855 bits (442), Expect = 0.0
Identities = 460/466 (98%), Gaps = 3/466 (0%)
Strand = Plus / Minus
Query: 5 gaattcttaaata-tccaaaactagctggagtagacaatactaactgcagatgcaaaggc 63
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 gaattcttaaatagt-caaaactagctggagtagacaatactaactgcagatgcaaaggc 417
Query: 64 taatgtgggataggggatcaaggaaacgagaatcagaagtggagtgacacacacagaaag 123
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 416 taatgtgggataggggatcaaggaaacgagaatcagaagtggagttacacacacagaaag 357
Query: 124 accaattagagaaggaatgtggctagtaaatggaagtgaagagagtattacctgattaga 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 accaattagagaaggaatgtggctagtaaatggaagtgaagagagtattacctgattaga 297
Query: 184 gtgtgacttggtgatacaaggtcccactgaaactaggttaaagacttctgtatgaaatgg 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 gtgtgacttggtgatacaaggtcccactgaaactaggttaaagacttctgtatgaaatgg 237
Query: 244 gccttacaaagtatagactaacaaatacgcctaagggcctggagagatgatgacagcagc 303
||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct: 236 gccttacaaagtatagactaacaaatatgcctgagggcctggagagatgatgacagcagc 177
Query: 304 taagagtatttgctactcttgtagaagactagggtttgactctcagcacccacagcgtgg 363
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 176 taagagtatttgctactcttgtagaagacta-ggtttgactctcagcacccacagcgtgg 118
Query: 364 cttacaactatctgtaactctagttcctggagaacctgataacctcctccagcctacaca 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117 cttacaactatctgtaactctagttcctggagaacctgataacctcctccagcctacaca 58
Query: 424 gctactgggcacacatgattcataaacacacacagcctatcacgca 469
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57 gctactgggcacacatgattcataaacacacacagcctatcacgca 12
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 873
Length adjustment: 10
Effective length of query: 463
Effective length of database: 863
Effective search space: 399569
Effective search space used: 399569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no341_a10.g1 MSMg01no341_a10.g1 CHROMAT_FILE:
MSMg01no341_a10.g1 PHD_FILE: MSMg01no341_a10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:30:10 2005
(484 letters)
>mm_chr3_30556361_30557244
Length = 884
Score = 913 bits (472), Expect = 0.0
Identities = 481/484 (99%)
Strand = Plus / Plus
Query: 1 tctgtaaggaaaaatgtgacctgactttcttgcttagcaatgggcaacctgaggatgggt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctgtaaggaaaaatgtgacctgactttcttgcttagcaatgggcaacctgaggatgggt 260
Query: 61 ccatagttctctacagaatgctagcaagataagttcattctcaccagtgtctttgtgtgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccatagttctctacagaatgctagcaagataagttcattctcaccagtgtctttgtgtgt 320
Query: 121 gtattctttaagaaccatttgtccgtgttcctcttaatgatatagcagctctgggctgcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtattctttaagaaccatttgtccgtgttcctcttaatgatatagcagctctgggctgcc 380
Query: 181 cataatctttagtcacagcactgagccatggtggatataatactgataattctaatgtga 240
||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cataacctttagtcatagcactgagccatggtggatataatactgataattctaatgtga 440
Query: 241 cacagagatccatcctattcctaattctctattacactgtttcctgaacatgccatatca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cacagagatccatcctattcctaattctctattacactgtttcctgaacatgccatatca 500
Query: 301 taccaatgatagaaatgcaaaaaatatattttgtctaataaagttgaaaatagataaatt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taccaatgatagaaatgcaaaaaatatattttgtctaataaagttgaaaatagataaatt 560
Query: 361 gaatgcattcaaaccaactgtctatgcatttgggctactttaaccgagatgattcggggt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 561 gaatgcattcaaaccaactgtctatgcatttgggctactttaaccgagatgattcagggt 620
Query: 421 acttagttgaagaactgtagtcatttccaaagatagctagctattaaaagggagtagatg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acttagttgaagaactgtagtcatttccaaagatagctagctattaaaagggagtagatg 680
Query: 481 gtac 484
||||
Sbjct: 681 gtac 684
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 884
Length adjustment: 10
Effective length of query: 474
Effective length of database: 874
Effective search space: 414276
Effective search space used: 414276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
