BAC Information

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BAC

Clone NameMSMg01-341B06
Chromosome3 (Build37)
Map Location 19,640,743 - 19,641,162
singlet/doubletsinglet
Overlap genenone
Upstream geneArmc1, Mtfr1, Pde7a, Dnajc5b, EG620290, Trim55, Crh
Downstream geneLOC665002, LOC100039304, LOC100040237, 4632415L05Rik, Cp, Hps3, Hltf, Gyg, Cpa3, EG664965, LOC100040283, Cpb1, Agtr1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-341B06.T7 (MSMg01no341_b06.b1)MSMg01-341B06.TJ (MSMg01no341_b06.g1)
ACCAG454963AG454964
length743755
length of high quality
(start - end)
422 (47 - 468)392 (75 - 466)
definitionCHROMAT_FILE: MSMg01no341_b06.b1 PHD_FILE: MSMg01no341_b06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:30:13 2005CHROMAT_FILE: MSMg01no341_b06.g1 PHD_FILE: MSMg01no341_b06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:30:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTGTGAGTCTAGGAAAAATAATGTATAAACATATTTCAATGTGCA
TTTAGGAAAACTCCACAGAAGCACTTTGTGCACCAAGAGTTGTTACATAT
ATTAAAATAGAATGCAGCCGGGGAATGCTGAACCATGCACAGGGTAAGCA
TTTTCCCTTTAGGGTATCTCTGTGGGAAAGCATCATTAATACTGATGAAG
AAATTAGGAACATGTTCAAGTTAATTAATTTACACTTAATTTTGATCTTA
GAAACATTATATTAAAAGTAATAAATGTTTACTTAAAGCAACAGAACTGG
AGATCAACTGCCATTATAAAGATAGATCTGTATTCCCAATGGAGCCTTTA
AACTCAATCAATGGCTCGACACTAAGTCTACAATGACGTGGCTTGCTAGT
TTCACAGGGACTTGTCCCAGCTAGACCAAGCTGTGTTTTTAATTACAAAG
GAAATACGTTAAACAGCAGCCAAATTTTCCCCTTTTTTTTTTCTTCCTCC
AAGCGCCTTATTTTGTACTCCTACTAACACCGCTATTTCCACATGGACCC
CCTGTACCCCCAGTAAGGCGATTGTAACTCCGCCCTGGAGGGTTGGGATT
CCAGTCCCCCCCCCCCCTTTATGTCTTACACTATTCCCCGGCACCTGAAG
TTGATCTCCTCACAAACTAATACTGGCGACCTCCTCTCCTTAN
AATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCATTGCTCCTAATCAGCACAAAGAA
GCTTGATTCCTTGGATTTTTGGTGTCTGGATATTATTATTTTACAAATTA
GATAGGTTGTTATTCTAAGGGATAATTTATGAATGGTCATAATTTTGAAC
ATGGAGGAAATAGATGGAATGGACTGCTAAATATTTGTGAATAAAACATT
GTATAGCCATAATATTACATTGGTAGAAATTGAAGTTACAATCTCTTAAA
TTGGTACAGAATTTATATAGTGATAAAGATTTAAGATTTTCATTGGTATG
AATCTGTATATTGATATAAAATTTGAAATTAATATTGTTACACTTAGATA
GGCATTGTGCCTATGCACCTCATTTAAGAACAAGATGTTTGTGATGGTTT
GTATATGGTTGGGCCAGGGAGTGGCACAATTAGGAGGTATGGCCTTGTTC
GAGTACATGTGCCATAGTATGTATGGGCTAGAATACCCTAGTCCTATCCT
TCCTACAATTCAGAATTCTCCTAACAGTCCTTCGGATGAAGATTCACCCT
CCTCTTTGTAACCTCTCACATTCTTCCTTTTTATTGCCCGGTCTTGGAAC
CCGCCTTGGCCCCCACCCTGCATGTTAAAGCGATTGGATTCTCTTGTTTC
TTCGTTACGTTGTTTCCCCTTTTCAATGCCCTCCTTCCCTCCAAAGACTT
CTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no341_b06.b1 MSMg01no341_b06.b1 CHROMAT_FILE:
MSMg01no341_b06.b1 PHD_FILE: MSMg01no341_b06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:30:13 2005
         (422 letters)



>mm_chr3_19640540_19641362
          Length = 823

 Score =  789 bits (408), Expect = 0.0
 Identities = 417/420 (99%), Gaps = 1/420 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctgtgagtctaggaaaaa-taatgtataaacatatttcaatgtgcatttaggaa 62
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 623 ggaattctgtgagtctaggaaaaattaatgtataaacatatttcaatgtgcatttaggaa 564

                                                                       
Query: 63  aactccacagaagcactttgtgcaccaagagttgttacatatattaaaatagaatgcagc 122
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 563 aactccacagaagcactttgtgcaccaagagttgttacatatattaaaacagaatgcagc 504

                                                                       
Query: 123 cggggaatgctgaaccatgcacagggtaagcattttccctttagggtatctctgtgggaa 182
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 cggggaacgctgaaccatgcacagggtaagcattttccctttagggtatctctgtgggaa 444

                                                                       
Query: 183 agcatcattaatactgatgaagaaattaggaacatgttcaagttaattaatttacactta 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 agcatcattaatactgatgaagaaattaggaacatgttcaagttaattaatttacactta 384

                                                                       
Query: 243 attttgatcttagaaacattatattaaaagtaataaatgtttacttaaagcaacagaact 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 attttgatcttagaaacattatattaaaagtaataaatgtttacttaaagcaacagaact 324

                                                                       
Query: 303 ggagatcaactgccattataaagatagatctgtattcccaatggagcctttaaactcaat 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ggagatcaactgccattataaagatagatctgtattcccaatggagcctttaaactcaat 264

                                                                       
Query: 363 caatggctcgacactaagtctacaatgacgtggcttgctagtttcacagggacttgtccc 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 caatggctcgacactaagtctacaatgacgtggcttgctagtttcacagggacttgtccc 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 422
Length of database: 823
Length adjustment: 9
Effective length of query: 413
Effective length of database: 814
Effective search space:   336182
Effective search space used:   336182
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)