BAC Information

Click to search

BAC

Clone NameMSMg01-341I05
Chromosome3 (Build37)
Map Location 78,724,662 - 78,725,082
singlet/doubletsinglet
Overlap genenone
Upstream geneEG626461, LOC667526, LOC626479, LOC100041691, LOC383883, LOC100041748
Downstream geneLOC100041716, LOC100041725, LOC100041766, Rapgef2, LOC100041741, LOC100041793, LOC667613, Ppid, Etfdh, 4930579G24Rik, Rxfp1, Tmem144, 1110032E23Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-341I05.T7 (MSMg01no341_i05.b1)MSMg01-341I05.TJ (MSMg01no341_i05.g1)
ACCAG455291AG455292
length739750
length of high quality
(start - end)
503 (66 - 568)422 (74 - 495)
definitionCHROMAT_FILE: MSMg01no341_i05.b1 PHD_FILE: MSMg01no341_i05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:30:47 2005CHROMAT_FILE: MSMg01no341_i05.g1 PHD_FILE: MSMg01no341_i05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:30:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGGATCCGCGGAATTC
AAGGCCTATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCC
AACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGG
GACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTACTTG
AAGTATTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGGGGATACAA
ATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGT
ATATATAAGTGACCCTAAAAATTCTACCAGAGAACTCCTAAACCTGATAA
ACAGCTTCGGTGAAGTAGCTGGATATAAAATAAACTCAAACAAGTCAATG
GCCTTTCTCTATACAAAGAATAAACAGGCTGAGAAAGAAATTAGGGAAAC
AACACCCTTCTCAATAGTCACAAATAACATAAAATATCTTGGCGTGACTC
TAACTAAGGAGGTAAAGATCTGTATGATAAAAACTTCAAATCTCTGAAGA
AAGAAATTAAAGAAGATCTCAGAAGATGGAAAGATCTCCCATGCTCATGG
ATTGGTAGGATCAACATTGTAAAAATGGCTATCTTGGCAAAAGCAATCTA
CAGATTCAATGCCATCCCCCTTAAAATTCCCACTCAATTTCCTTCACGAA
TNGGGAATGAGCAATTTGCACAATTGGTTTGGGAATAAA
AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGAGTTGAAAAACATACACATACTCAA
AAAATATTTCAGGGTCTAGGGAGGATTGGCTTTTCAAGGGAAAGTATGAA
TAAATAGAATAAATAATAGCTTGGTTCACAACATCTAAAGAGAGGGAGAT
AATTCAATAAATGCCTAAAATTTAACTGTAAAATTACAAAGTAGCCGGTG
CTGCCTCATTCTGCCTCATTTAAATTTTACCAACTTTTCAGTGATCAAGG
TGGTTCCTCAGTTCATATAAAGGTACAGGCATTATCTATTGGTATTTTCT
GTATATGAAACATTTTGAAAGCATATATACAGCGCAGNCCTTTTCTTTCC
TTCCTCTGTATTCTTTCTATGTTATCACTGTGGATTTTTTTCTCTATACT
GGCAATTGAACCCAAGGCTTTGCACATGCTTTCAGATATCTCTGTCAGTG
AGCCATATCTCAGCCCTCATTTCATAGATATTTGAAACTGTAGCTTCCAC
AGCGTCTCCTAAAGACTTCTATTGCTTGGCTGAACCCCAAGTTGTTAATC
CTGCATCGTTTAAAGCCTCGGCTGGAAAATCTTCAGAAACACCCTTCGCG
CTTTTTCCCTGTTCTCTTTTTTCGCCCGCGCGAACCCCCCGATTTTCCCC
TTGCTTTTCCCTTACATTGACTCCCCCCTTCTCTCGCCTTCCGCTTTCGT

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no341_i05.g1 MSMg01no341_i05.g1 CHROMAT_FILE:
MSMg01no341_i05.g1 PHD_FILE: MSMg01no341_i05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:30:47 2005
         (422 letters)



>mm_chr3_78724522_78725342
          Length = 821

 Score =  754 bits (390), Expect = 0.0
 Identities = 414/423 (97%), Gaps = 3/423 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   agagttgaaaaacatacacatactc-aaaaaatatttcagggtctagggaggattggctt 59
           |||||||||||  |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 561 agagttgaaaa--atacacatactcaaaaaaatatttcagggtctagggaggattggctt 504

                                                                       
Query: 60  ttcaagggaaagtatgaataaatagaataaataatagcttggttcacaacatctaaagag 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 ttcaagggaaagtatgaataaatagaataaataatagcttggttcacaacatctaaagag 444

                                                                       
Query: 120 agggagataattcaataaatgcctaaaatttaactgtaaaattacaaagtagccggtgct 179
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 443 agggagataattcaataaatgccttaaatttaactgtaaaattacaaagtagccggtgct 384

                                                                       
Query: 180 gcctcattctgcctcatttaaattttaccaacttttcagtgatcaaggtggttcctcagt 239
           | ||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct: 383 gtctcattctgcctcatttaaattttaccaacttttcagtgatcagggtgcttcctcagt 324

                                                                       
Query: 240 tcatataaaggtacaggcattatctattggtattttctgtatatgaaacattttgaaagc 299
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 323 tcatataaaggtacaggcattatctattggtattttctgtatacgaaacattttgaaagc 264

                                                                       
Query: 300 atatatacagcgcagnccttttctttccttcctctgtattctttctatgttatcactgtg 359
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 atatatacagcgcagtccttttctttccttcctctgtattctttctatgttatcactgtg 204

                                                                       
Query: 360 gatttttttctctatactggcaattgaacccaaggctttgcacatgctttcagatatctc 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 gatttttttctctatactggcaattgaacccaaggctttgcacatgctttcagatatctc 144

              
Query: 420 tgt 422
           |||
Sbjct: 143 tgt 141


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 422
Length of database: 821
Length adjustment: 9
Effective length of query: 413
Effective length of database: 812
Effective search space:   335356
Effective search space used:   335356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)