BAC Information

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BAC

Clone NameMSMg01-341K01
Chromosome3 (Build37)
Map Location 143,649,937 - 143,650,370
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039883, 1700001N15Rik, EG668889, EG621809, LOC100039938
Downstream geneLOC100039952, Lmo4, LOC545572, Hs2st1, Sep15, LOC435761, Sh3glb1, LOC668890, Clca1, Clca2, Clca4, EG622139, AI747448, Clca6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-341K01.T7 (MSMg01no341_k01.b1)MSMg01-341K01.TJ (MSMg01no341_k01.g1)
ACCAG455377AG455378
length723738
length of high quality
(start - end)
438 (41 - 478)460 (73 - 532)
definitionCHROMAT_FILE: MSMg01no341_k01.b1 PHD_FILE: MSMg01no341_k01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:30:56 2005CHROMAT_FILE: MSMg01no341_k01.g1 PHD_FILE: MSMg01no341_k01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:30:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GATGTTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
AGATTTGAAGTCTGAGAAAGGAAGAGAAAGCTCCCTTCTTGGCCTTCGTC
CCATCCCGAACAATACAAGGTTGATACGGAACTTCAGAGAATGGGTTTAG
GATGGGTATAGATTTTATTTTAAAACCACTTACATTTGCGCACTTCTCCT
TCTTTGTGAGCAAGCAAATGGTAGTTTTGCAACCATCGTCCTCCTGTAAG
AACACATCATTTGTGAAAGGAACACTCAGCTCTTACCGGGTCGCTTTTAA
TAAAAGTAAAACTATATCTCACTTGTTTTGTAGGAAGCCTAAGAGACTTG
GATTAGATACACCAGTGAATAGAAAGAAATTCAGCAAAAATATGAGCCTG
TTTGTCTTCTGGCATCTTGGAAACTCACCCACTCAATTTGGGAAGCAGTG
GGCAGTGGAAGGATGGAGGCTTGTTTACAGCACTTGGAAAACTAGCACTT
CCCATTCCTTTATCCCTGTGAAGAGTTCAGGCGTTCTGTCCTCTGTGAGC
TTTCTCTTGCACCTTGGAGGTTCGCTTTCCCCCTCTGTCTTCCCCTTTTT
TTTTTTTTTCCTTCCCCCTTCTTACTTTCCCTGCTTTCGCTCTTCCCCTC
TCTTTTTTTTTTTTCTTTTGCCCCGTTTTTCGCCCTTTCTCTTTGACGCG
TTTACCCCGTCCCTTCCGCCCCC
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCTTCAAGACTTAAAACTATTTTCAGTT
GATTGTAGCTACAAACAAAGTTTGTGTGAGTTCTGACATCAACAGACAAA
AACCATTTGGGTTTCTGCCCAAGATGAAGCCAGTGAGCATTCCATCATGG
AGGGGTCTTACACGCGTTCGCGACCGGCCAGGAAAGACGCAGCAAACCAG
AATCTTCTGCGGCAAAACTTTATTGCTTACATCTTCAGGAGCAAGAGTGC
AAGAGCGCAAGAGTGCAAGAGCTTTATTGCTTACATCTTCAGGAGCAAGA
AGCAAGAGCCAGAGCAAGAGCTCTATTGCTTACATCTTTAGGAGCCAGAG
CACAAGAGCGCTAGAGTGCAAGAGCCAGAGCAAGAGAGAGAATGGCGAAA
CCCCGTTCCTTTTTAAGGAGAATTATTCTCCACCTAGGACGTATTACTCC
CTGATTGGCTGCAGCCCATCGGTCGAGTTGTCGTCACGGGGAAGGCAGAG
CACATGTAGTGGAAAACTACCCTTGGTACATGTGCAGATTATTTGCTTAC
CACTTTACAACACTGGATGCTCTCACTATCTTGCCCTGCTTAATGCGATG
TCCGCTTTCCCCTTAGGGGCCTCTGTTACCCCCTTTTCCCAGAATTTTTA
CCGTCCTTCCTGTCATTTTTACATGTCATCTTCTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no341_k01.b1 MSMg01no341_k01.b1 CHROMAT_FILE:
MSMg01no341_k01.b1 PHD_FILE: MSMg01no341_k01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:30:56 2005
         (438 letters)



>mm_chr3_143649733_143650570
          Length = 838

 Score =  832 bits (430), Expect = 0.0
 Identities = 433/434 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagatttgaagtctgagaaaggaagagaaagctcccttcttggccttcgtcccat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 gaattcagatttgaagtctgagaaaggaagagaaagctcccttcttggccttcgtcccat 579

                                                                       
Query: 65  cccgaacaatacaaggttgatacggaacttcagagaatgggtttaggatgggtatagatt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 cccgaacaatacaaggttgatacggaacttcagagaatgggtttaggatgggtatagatt 519

                                                                       
Query: 125 ttattttaaaaccacttacatttgcgcacttctccttctttgtgagcaagcaaatggtag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 518 ttattttaaaaccacttacatttgcgcacttctccttctttgtgagcaagcaaattgtag 459

                                                                       
Query: 185 ttttgcaaccatcgtcctcctgtaagaacacatcatttgtgaaaggaacactcagctctt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 ttttgcaaccatcgtcctcctgtaagaacacatcatttgtgaaaggaacactcagctctt 399

                                                                       
Query: 245 accgggtcgcttttaataaaagtaaaactatatctcacttgttttgtaggaagcctaaga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 accgggtcgcttttaataaaagtaaaactatatctcacttgttttgtaggaagcctaaga 339

                                                                       
Query: 305 gacttggattagatacaccagtgaatagaaagaaattcagcaaaaatatgagcctgtttg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 gacttggattagatacaccagtgaatagaaagaaattcagcaaaaatatgagcctgtttg 279

                                                                       
Query: 365 tcttctggcatcttggaaactcacccactcaatttgggaagcagtgggcagtggaaggat 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 tcttctggcatcttggaaactcacccactcaatttgggaagcagtgggcagtggaaggat 219

                         
Query: 425 ggaggcttgtttac 438
           ||||||||||||||
Sbjct: 218 ggaggcttgtttac 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 438
Length of database: 838
Length adjustment: 9
Effective length of query: 429
Effective length of database: 829
Effective search space:   355641
Effective search space used:   355641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)