BAC Information

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BAC

Clone NameMSMg01-342H09
Chromosome3 (Build37)
Map Location 96,979,806 - 96,980,271
singlet/doubletsinglet
Overlap geneAcp6
Upstream geneSf3b4, Sv2a, Bola1, Hist2h2ab, Hist2h2ac, Hist2h2be, Hist2h3c2, Hist2h2aa1, Hist2h3c1, LOC100043378, Hist2h4, Hist2h3b, Hist2h2bb, Fcgr1, Pafah1b1-ps1, Terc, BC107364, LOC668500, Hfe2, Txnip, Polr3gl, Ankrd34, 6330549D23Rik, Rbm8a, Pex11b, Itga10, Ankrd35, Pias3, Polr3c, Zfp364, Cd160, Pdzk1, Gpr89, Gja8, 9230114J08Rik, Gja5
Downstream geneBcl9, Olfr1402, Chd1l, Fmo5, Prkab2, Pde4dip, Sec22b, EG433632, LOC100042975, Notch2, Adam30
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-342H09.T7 (MSMg01no342_h09.b1)MSMg01-342H09.TJ (MSMg01no342_h09.g1)
ACCAG456009AG456010
length743731
length of high quality
(start - end)		470 (34 - 503)427 (64 - 490)
definitionCHROMAT_FILE: MSMg01no342_h09.b1 PHD_FILE: MSMg01no342_h09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:31:59 2005CHROMAT_FILE: MSMg01no342_h09.g1 PHD_FILE: MSMg01no342_h09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:31:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTATGATC
GCAGGGCAGTGTCGGCCTGTGGTAGCAAAGTACAACATGGCCACATCTCA
GTTCTATTATAGATCTCTTAGAAATAGGGCTATTCTCCAGCTCTCCTGAG
TGTGTCTGCCAGGCTGTACCTTCTCACTGTGAGGCCTGTTTTAGGAAGTC
ACAGAGGTGTCTTGGTGCCCTGGCTAACCCAGCATTATTGATGTCTAGGA
GAGGAACTGTGTACTCTGCAGGGGTGGGACTATTAGCTCTTTCAGCTCAA
GGTCATAACTCTGCTAAGGCCTCTCATCTAGTCAGTCAGGATGCAATGCT
TTTTAGTCTGGAAACTTGGGTCTTCCTGGCTGTTACATGTGTGCTCATCC
ATACTGTGTGGCTGAGCCTCTGGGCTCAACTAAGGGCAGAGGGTGGAGCT
CTCTACAGACCTGCTGACTTCTGTTTCTTTTCCAGGAGCAGGTACCAAGG
GGCTGCCCCGACAAGCTCTGTCCACTGGACAAGTTCTTGAACACCTTGTC
AGTTTACTCTGTTAGCCCAAAAAAATACCGAACACTCCGCGTCCACAACC
TAATTGTAGTAATTTGTGTAGTGGCCTCGTTTTTTTCCCCCATTTTTTTT
TTTTATTTTCTGGGCTTCTCCTCAATACATTTTTTTTTTTTATTCCACCC
TTCCGATTGTTTCTTATTCACCTTTTTTTTTTTTTTACTTGGT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXAAAGTAAGTGAGAAGTAGCAGTGAGTGAGGTGGGAAG
AACACTAGGAATGTGGGGCCAGGAACGCAAATGCCAAGAGCATCTTCAGA
AAAATGAAATCACCAATGGTATGCAACACTCCAAGTTGGTCCAGGGAGAT
GAGGACCATCATATCGAGCTATGTGAATGCCACTAGCAATCTTTTTTTTT
TGAGATTTATTGATTTATTTTATGTATATGAGTACATAAGCTGCATGCCA
GAAAAGGGTGTCAGATCACATAATTGATGGTAATAAGTTACTGTGTGGTC
TCTGGGAATTGAACTCAGGACCTCTGGAAGAACAGTCAGTGCTTTTAACA
GCTGACCATCTCTCCAGCCCAGTCACTGGCAATCTTGACAAAAGGTAAAG
TAGCGTGGCATAAAGATGTGACTGGAATAGGATTTCAGGCAGAGGACGGA
AAGGGATGAGAAGCATTGAAAACAAACTGGTTGAAGGCTTTGCACCAGGG
GGCAGGGGAGAATGCCTGGTAAGGAGTCCTAAATGAACAATTTTTTAACT
GAGGAAAATGATGTTTTGTGTGGCAAAAAATGTTATTCCCTTAAAACAAA
TGGATATGCCCTAAAATTTTTACCCTGGTGGGGTGAATTCTTTTGTCTTG
CGCGATATTTTTTTTTCGTCATCTTATTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no342_h09.b1 MSMg01no342_h09.b1 CHROMAT_FILE:
MSMg01no342_h09.b1 PHD_FILE: MSMg01no342_h09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:31:59 2005
         (470 letters)



>mm_chr3_96979602_96980471
          Length = 870

 Score =  870 bits (450), Expect = 0.0
 Identities = 462/466 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctatgatcgcagggcagtgtcggcctgtggtagcaaagtacaacatggccacatc 64
           ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctatgagcgtagggcagtgtcggcctgtggtagcaaagtacaacatggccacatc 264

                                                                       
Query: 65  tcagttctattatagatctcttagaaatagggctattctccagctctcctgagtgtgtct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tcagttctattatagatctcttagaaatagggctattctccagctctcctgagtgtgtct 324

                                                                       
Query: 125 gccaggctgtaccttctcactgtgaggcctgttttaggaagtcacagaggtgtcttggtg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gccaggctgtaccttctcactgtgaggcctgttttaggaagtcacagaggtgtcttggtg 384

                                                                       
Query: 185 ccctggctaacccagcattattgatgtctaggagaggaactgtgtactctgcaggggtgg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ccctggctaacccagcattattgatgtctaggagaggaactgtgtactctgcaggggtgg 444

                                                                       
Query: 245 gactattagctctttcagctcaaggtcataactctgctaaggcctctcatctagtcagtc 304
           ||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct: 445 gactattagctctttcagctcaaggccagaactctgctaaggcctctcatctagtcagtc 504

                                                                       
Query: 305 aggatgcaatgctttttagtctggaaacttgggtcttcctggctgttacatgtgtgctca 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aggatgcaatgctttttagtctggaaacttgggtcttcctggctgttacatgtgtgctca 564

                                                                       
Query: 365 tccatactgtgtggctgagcctctgggctcaactaagggcagagggtggagctctctaca 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tccatactgtgtggctgagcctctgggctcaactaagggcagagggtggagctctctaca 624

                                                         
Query: 425 gacctgctgacttctgtttcttttccaggagcaggtaccaaggggc 470
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gacctgctgacttctgtttcttttccaggagcaggtaccaaggggc 670


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 470
Length of database: 870
Length adjustment: 10
Effective length of query: 460
Effective length of database: 860
Effective search space:   395600
Effective search space used:   395600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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