Query= MSMg01no342_i01.b1 MSMg01no342_i01.b1 CHROMAT_FILE:
MSMg01no342_i01.b1 PHD_FILE: MSMg01no342_i01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:32:02 2005
(530 letters)
>mm_chr3_5264464_5265396
Length = 933
Score = 862 bits (446), Expect = 0.0
Identities = 510/534 (95%), Gaps = 9/534 (1%)
Strand = Plus / Plus
Query: 1 tattgactacaatgagagtattaaaatatttca-tgccatttgtaaggcatctccactga 59
||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |||
Sbjct: 201 tattgactacaatgagagtattaaaatatttcattgccatttgtaaggtatctccattga 260
Query: 60 ctctaaaaggctatattttttttcagttatatgtgcgttagcaagtaaaag--tt-cttt 116
||||||||||||||| |||||||||||||||||||| |||||| ||||| | || ||||
Sbjct: 261 ctctaaaaggctata-tttttttcagttatatgtgcattagcatgtaaatgtattccttt 319
Query: 117 taagaactttataaagcaaagagttcaaaattagtccaaagtctaaatactgatcagttg 176
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 320 taagaactttataaagcaaagagttcaaaattagtccaaagtctaaatacttatcagttg 379
Query: 177 aatatataaaaatcttgagcaaatgtctttaaagagcgtttgtggaacaaggaaaagaga 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 aatatataaaaatcttgagcaaatgtctttaaagagcgtttgtggaacaaggaaaagaga 439
Query: 237 ttattttttttattcaggtgaacagtttaattagcattaaactgttaattagcattaatt 296
|||||||| || ||||| ||||||||||||||||||||||||||||||||| |||
Sbjct: 440 ttatttttcagatccaggtaaacagtttaattagcattaaactgttaattagc----att 495
Query: 297 aattaattaattaattaattagcattctgatgcttctaattgatagggggctcctacttg 356
|||||||||||||||||||| |||||||||||||||| |||||||||| |||||||||||
Sbjct: 496 aattaattaattaattaattggcattctgatgcttctgattgatagggcgctcctacttg 555
Query: 357 cagggtttctagctcacttctccagtgtctggaagattacatttgactgtcgcaatatta 416
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 caggatttctagctcacttctccagtgtctggaagattacatttgactgtcgcaatatta 615
Query: 417 accagatttgatcttggcctgtctgaggtcaagcagactggccaggtcagcctgtttgtc 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 accagatttgatcttggcctgtctgaggtcaagcagactggccaggtcagcctgtttgtc 675
Query: 477 tgtgtgcatgcactgtgacatctactcagagtgacagatagaggatgggggtgg 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 tgtgtgcatgcactgtgacatctactcagagtgacagatagaggatgggggtgg 729
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 530
Length of database: 933
Length adjustment: 10
Effective length of query: 520
Effective length of database: 923
Effective search space: 479960
Effective search space used: 479960
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no342_i01.g1 MSMg01no342_i01.g1 CHROMAT_FILE:
MSMg01no342_i01.g1 PHD_FILE: MSMg01no342_i01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:32:02 2005
(559 letters)
>mm_chr3_5416087_5417045
Length = 959
Score = 1050 bits (543), Expect = 0.0
Identities = 555/559 (99%)
Strand = Plus / Minus
Query: 1 caaagaccacattacactaaaggaaatggacaaggagccaagtttcctgtttggttcttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 759 caaagaccacattacactaaaggaaatggacaaggagccaagtttcctgtttggttcttt 700
Query: 61 ctgtaccttatcctaaaagatttgtttctgtggggtctttctaaatttaagttgaactgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 ctgtaccttatcctaaaagatttgtttctgtggggtctttctaaatttaagttgaactgg 640
Query: 121 tgggaaagagcagagaacagcagagtaaggaatgcagcctgtggacactaccatcagcac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 tgggaaagagcagagaacagcagagtaaggaatgcagcctgtggacactaccatcagcac 580
Query: 181 tgacagtagtcaggaaagctttgtggtgaatttcgtcttctcccaggctggcatgagagc 240
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 579 tgacagtagtcaggaaagctttgtggtgaattttgtcttctcccaggctggcatgagagc 520
Query: 241 agagtgcagattggacaattcactccctcttcagcactgtttcagatgaagagggctttg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 agagtgcagattggacaattcactccctcttcagcactgtttcagatgaagagggctttg 460
Query: 301 tgagaggaaagtttgcatttaatgtttaaaaaatatattgtctctgctctgtatctaaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 tgagaggaaagtttgcatttaatgtttaaaaaatatattgtctctgctctgtatctaaaa 400
Query: 361 gcaacccacaggtgctgacactctagaggtagtattcaaagttgtaggttaaggaactcg 420
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 399 gcaacccacaggtgctgacattctagaggtagtattcaaagttgtaggttaaggaactcg 340
Query: 421 aaaatgaaatagttcagtttgtcaaaatctgttcaccagattttcagtctcacagaatac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 aaaatgaaatagttcagtttgtcaaaatctgttcaccagattttcagtctcacagaatac 280
Query: 481 ataagagatttaagagtgcatacctctcataagcagaaagaatactactgggaaacatga 540
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 ataagaggtttaagagtgcatacctctcataagcagaaagaatactactgggaaacatga 220
Query: 541 gtgtggctattaaaattac 559
||||||||||||||||||
Sbjct: 219 atgtggctattaaaattac 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 959
Length adjustment: 10
Effective length of query: 549
Effective length of database: 949
Effective search space: 521001
Effective search space used: 521001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
