BAC Information

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BAC

Clone NameMSMg01-342L01
Chromosome3 (Build37)
Map Location 117,257,085 - 117,257,325
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043705, Lrrc39, A930028L21Rik, Sass6, Hiat1, Slc35a3, Agl, LOC100043710, LOC100043250, Frrs1, Palmd, EG668749, 1700061I17Rik, LOC674908, D3Bwg0562e
Downstream gene4833424O15Rik, EG668759, Snx7, LOC100043260
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-342L01.T7 (MSMg01no342_l01.b1)MSMg01-342L01.TJ (MSMg01no342_l01.g1)
ACCAG456180AG456181
length750756
length of high quality
(start - end)
242 (63 - 304)325 (66 - 390)
definitionCHROMAT_FILE: MSMg01no342_l01.b1 PHD_FILE: MSMg01no342_l01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:32:17 2005CHROMAT_FILE: MSMg01no342_l01.g1 PHD_FILE: MSMg01no342_l01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:32:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CGGCGCTATACGACTCACTATTTCAAGAGAAAGCGCGGAATTCAAAACTT
GCTNTACAAGAAATCTGAATTTAGAAATCTTAGCGGCTACACAAATTCTC
ACATTGGTTCAAAAACATTATCTACTTCTTTTTTTTTCATGCCTAGTAAA
ACAATACTCCAATATTTACTCTGTTTTAAATTGTCTCACATTCTATGTTT
TGTTTCTAAACATGATACTAAGCTCTTACAAGAGTTAATGCTAAGAGGTT
CTGGCTCCTTAGAGAATTCAGTCTATACAAATGACATCCTTTCATTTGAC
TAGTATCTTTTATATTAGATATGCATTACATAGCAAGCTCCTAATGCACT
TAAATGCTGACAGTTCAACTTATTGCTAGAGAATGTTGAAAGGCAGATAA
TTACCGACAGTATTGTGAGGGGTGTCTAAATCAAACAGAAGCACAGAANA
AAATAACTCTGCTAATGTAAGTCAATGTAATTAGATTTTCTTGTAATTTA
TTTAAATATGACTGTTTACAATTTTACCTAATGATTAACAAGCCTAATAT
CATTCAAATAATTTAAATGAAAGGGCATTTTTCAAATCCTGCCCCCTGGT
TGAAACCTTCCCAAAAGGTTAATAAATTTCCAAACAAAATTTTTCGCCCT
TTTATATATTTTTTTTCTCCCCATCCCCCCTTTCCATTTATATTTATCTC
GCCACTTCCGCCCATCCCTTATAATCCCCCCCCTTTCCTTAATAAACTCT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTCTGTACCCCCTTTTAAAATTAGGTTATTTGGTTT
TTTTGGAATTTAACTTCTTGAGTTCTTTGTATATTTTGTATATTAACTCT
CTACTGGATGAAGGGCTAGTGAAGATCCTTTTCCAATTTATAGGTGCGCC
CTTCCCCCAGCCTTGAGCAGGATGGCTCATACCTGGCTTCCCACAGCTGG
CCAGCCCACCTAGGGTGGAGTCTTCTGACCTAGGTAAAGTCTATTGTCCT
GCCACATCTGAGGCTTTCCTTCAAGACGCCACTACCTGCTGAGGGGTTGA
ACCTGTTTTCCCTACAGTATCCTGACAAAGAAGAGATCCGGACAAAGCAA
TGCGGTCCGGCGATGGTTCCTATAACTCCCTACTTTAAGGTCGTAATATT
CTCCCTCACCCACCCTCTTTTTGCCCTCTTATTCATCCCTATCAGAATCT
TTTCTCCTTTAATCCTTGCCATTTCTCCCCCGCCCCTCTGATTCAATATA
TTTTCTCTTCCCGTATTTTTTGTTCTATTAAATCTTTTTCCTATTTACTA
TTCCCTCTCTTGTTTCAACATATTCGATCCTTCTTAGACCTATCATCTTA
TTCCCCATTTTTTCCTCCTCCCCATACCTTTTCCTCCTCCCCCGTCAGTA
TCTCTCTTTTTTCTCTTTTCATATTTTTTTTTTTTTCTCCTTCCCTTTTT
TTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no342_l01.b1 MSMg01no342_l01.b1 CHROMAT_FILE:
MSMg01no342_l01.b1 PHD_FILE: MSMg01no342_l01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:32:17 2005
         (242 letters)



>mm_chr3_117256885_117257526
          Length = 642

 Score =  437 bits (226), Expect = e-127
 Identities = 238/242 (98%), Gaps = 2/242 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   atctgaatttagaaatcttagcggctacacaaattctcacattggttcaaaaacattatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 441 atctgaatttagaaatcttagcggctacacaaattctcacattggttaaaaaacattatc 382

                                                                       
Query: 61  tacttctttttttttcatgc-ctagtaaaacaatactccaatatttactctgttttaaat 119
           ||||||||| |||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct: 381 tacttctttgtttttcatgcac-agtaaaacaatactccaatatttactctgttttaaat 323

                                                                       
Query: 120 tgtctcacattctatgttttgtttctaaacatgatactaagctcttacaagagttaatgc 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tgtctcacattctatgttttgtttctaaacatgatactaagctcttacaagagttaatgc 263

                                                                       
Query: 180 taagaggttctggctccttagagaattcagtctatacaaatgacatcctttcatttgact 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 taagaggttctggctccttagagaattcagtctatacaaatgacatcctttcatttgact 203

             
Query: 240 ag 241
           ||
Sbjct: 202 ag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space:   147489
Effective search space used:   147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)