Query= MSMg01no342_l20.b1 MSMg01no342_l20.b1 CHROMAT_FILE:
MSMg01no342_l20.b1 PHD_FILE: MSMg01no342_l20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:32:20 2005
(418 letters)
>mm_chr3_148053668_148054489
Length = 822
Score = 696 bits (360), Expect = 0.0
Identities = 398/418 (95%), Gaps = 14/418 (3%)
Strand = Plus / Plus
Query: 1 gtttttaaaagagagatttggctttctggggcttaaagctccacacgagtttcgccatgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtttttaaaagagagatttggctttctggggcttaaagctccacacgagtttcgccatgg 260
Query: 61 caatgagacaattgaagtaaacccaaaaaggagagatgcaaggagaatcagtatcactgt 120
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct: 261 caatgagacaattgaagtaaacccaaaagggagagatgcaaggagaatcagtgtcactgt 320
Query: 121 gtcagaaacccagtgatgacaatgacaaagaaggagtttcagtgagtccaggactgtagt 180
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtcagaaacccggtgatgacaatgacaaagaaggagtttcagtgagtccaggactgtagt 380
Query: 181 gatgtcaaacatagtagagccaatgcagttctgtggtt----aatactcgggttagaaga 236
||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 381 gatgttgaacatagtagagccaatgcagttctgtggttgtttaatactcgggttagaaga 440
Query: 237 agacaacgtaaaaataaggattacccagttatagcatgtactccgattatagtttttgtt 296
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agacaacgtaaaattaaggattacccagttatagcatgtactccgattatagtttttgtt 500
Query: 297 ttctgattttcttttactttgtctgtgttggtggtctgtgtggtgtatgtgtgtgctgtg 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttctgattttcttttactttgtctgtgttggtggtctgtgtggtgtatgtgtgtgctgtg 560
Query: 357 tgt------gtggtgtgtatggtctct----ctctgtgtgtgtgtgtgtgtgtgtgtg 404
||| |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 561 tgtatgtgtgtggtgtgtatggtctctttctctctgtgtgtgtgtgtgtgtgtgtgtg 618
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 418
Length of database: 822
Length adjustment: 9
Effective length of query: 409
Effective length of database: 813
Effective search space: 332517
Effective search space used: 332517
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no342_l20.g1 MSMg01no342_l20.g1 CHROMAT_FILE:
MSMg01no342_l20.g1 PHD_FILE: MSMg01no342_l20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:32:20 2005
(444 letters)
>mm_chr3_148218427_148219269
Length = 843
Score = 822 bits (425), Expect = 0.0
Identities = 440/445 (98%), Gaps = 3/445 (0%)
Strand = Plus / Minus
Query: 1 aactcccaaacgtgaaattgttattaagatgcatttaaaaataatgcatcttcaaataac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 aactcccaaacgtgaaattgttattaagatgcatttaaaaataatgcatcttcaaataac 584
Query: 61 caccttctgctttttccatcctgtctttaagtgcagggtagagcagaaggagtttacggg 120
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 583 caccttctgctttttccatcctgtctttaagtgcagggcagagcagaaggagtttacggg 524
Query: 121 gaagagcctgtggtccagaggttgtgcttccaggctgttgctttacggcctctgctatga 180
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 gacgagcctgtggtccagaggttgtgcttccaggctgttgctttacggcctctgctatga 464
Query: 181 agcctggcccctctcctggatctgctttcgatactgaagtgctcatttacccacaaatat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 agcctggcccctctcctggatctgctttcgatactgaagtgctcatttacccacaaatat 404
Query: 241 acaattattgttggcaaacaaaaaatatctttcactgtcatttccacctcatctcactcc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 acaattattgttggcaaacaaaaaatatctttcactgtcatttccacctcatctcactcc 344
Query: 301 tgactgttagaaacataatagagaggaaacaaggtgataggaaaacgtgctctgaagagc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 tgactgttagaaacataatagagaggaaacaaggtgataggaaaacgtgctctgaagagc 284
Query: 361 catgcatgtaggcacagtgtgaaccagatt-ctcgtttatgcaatgtgggggagagaggg 419
|||||||||| ||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct: 283 catgcatgta-gcacagtgtgaaccagattcct-gtttatgcaatgtgggggagagaggg 226
Query: 420 gagggggcgcgatagaaaagcttgg 444
|||||||||||||||||||||||||
Sbjct: 225 gagggggcgcgatagaaaagcttgg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 444
Length of database: 843
Length adjustment: 10
Effective length of query: 434
Effective length of database: 833
Effective search space: 361522
Effective search space used: 361522
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
