BAC Information

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BAC

Clone NameMSMg01-343A20
Chromosome3 (Build37)
Map Location 89,676,507 - 89,676,861
singlet/doubletsinglet
Overlap geneIl6ra
Upstream gene5830417I10Rik, Msto1, Dap3, Ash1l, Rusc1, Fdps, LOC628070, Pklr, Hcn3, Clk2, Scamp3, 1110013L07Rik, Gba, Mtx1, Thbs3, Muc1, Trim46, Krtcap2, Dpm3, Rag1ap1, Efna1, Efna3, Efna4, Adam15, Dcst1, Dcst2, Zbtb7b, Lenep, Flad1, Cks1b, Shc1, Pygo2, Pbxip1, Pmvk, Kcnn3, LOC668078, Adar, Chrnb2, Ube2q1, LOC668087, She
Downstream geneAtp8b2, LOC668102, Hax1, Ubap2l, 4933434E20Rik, 1700094D03Rik, Tpm3, Nup210l, Rps27, Rab13, Jtb, Creb3l4, LOC100042397, Slc39a1, Crtc2, Dennd4b, Gatad2b, Slc27a3, Ints3, Npr1, LOC668141, Ilf2, Snapap, 2500003M10Rik, S100a1, S100a13, S100a14, S100a16, EG628324, S100a3, S100a4, S100a5, S100a6, S100a7a, S100a8, S100a9, LOC668165, LOC383949, Pglyrp4, LOC329706, EG545541
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-343A20.T7 (MSMg01no343_a20.b1)MSMg01-343A20.TJ (MSMg01no343_a20.g1)
ACCAG456456AG456457
length762783
length of high quality
(start - end)		394 (38 - 431)356 (67 - 422)
definitionCHROMAT_FILE: MSMg01no343_a20.b1 PHD_FILE: MSMg01no343_a20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:32:44 2005CHROMAT_FILE: MSMg01no343_a20.g1 PHD_FILE: MSMg01no343_a20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:32:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTC
ACCTTTGTTTTATGGGGATGGGAGAAGCAAACTTAGCTTCCTGTCTGTGT
GTCTGTCTGTCTGTCTGTCTGCTTACCTATTTATCTAGCATCCAGTTACT
TATTGATTTTTTACTTTATGTGTATGAGTAGCTTGTCTGCATGTGTATCT
TTGTACCATAGGCATGCAGTGCCTACAGAGGCCATAAGAGGAAGCCAGAT
GCCCTGGAACTGAAGTTTCAGATGGTTGTAAGCCACCATGTGGGTGCTGG
GAATCAAATCCTGATCCTCTGGAAGAGCAGTCATTTTTCTTAAGGGCCAA
GTAATCTCTCCAGCACTCTTAATTGTTTGTTTCAAGACAAGGTCTCATAT
GTCCTAGGCTGGCCTTGAACTCACTTTGTAGTCCAGGACAACTTTAAACT
CCTGATCTCCCTTCTTTCCTCTCCCAAGTGTTATGATTACAGACATCCTT
CACCACACCATATTTGTTTTTATCTTCTATGTTTGGCCATTATGTTCGTT
TTTACTTCTTTTTTCTTTCTCCTTTTTTTCCCCTTTCCTTTCTATCCCCC
CTCTTTTTCCTTCTCCTTCTTCTTTTTCTCTCTTCCTTACTTCTCTTTCT
TTCTACCATTATCTTCCCCTCTCCTCCTCTTATCTATCTTCTCTATTTCC
ATTTTCCATTTTTTTTCTTACTATTTCTCCTGTCTTATTTCGTAATTTTC
CACACCCCTTTN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCACTCAGCGACTGAGCGCACTCCCCTTCGAAATA
ACTGGGCTGTCTTCCTGCAGCCAAATAACATTCCGCAGATTGTTTACATT
GCTTGTATAACAGGCCAAGAGCCAACGGCAGATCCAGAGCCAGCTATCAA
TCATTTATCATAACAAGAACAAGGAATAGTCTGCTGGTTTCAAGCCCCAA
AAAATGCCCAACTCTTGTTTATGACATTGGCTTTCCCTCCCCCACCCTAG
CACTTCCTTAGGTAATGGCAGCTGATGGGATTGGGGGAGGAGGGTCACCT
TATTCTCATTTTGGAGTCNATACATAGCAAGTCAGCCATAGAGAAGGAAG
TCAAAGGGAGGAGAGGAGGCCCTGGTTCAGCACACCTTGCCAAGGCCCCT
TGTGAAGGAGCCCCCGCCATACCCTTGGAGAACTGTATCTGGCGGCCCAC
TTTTCTTCCTACTTGCCGGTGTATCCTCCTGGCATATGGGCCCTGTGTCC
TTGTCCTAAATTCTCATTCTTAACATTTTGTCACATTCGCCTTTTCTTTT
TTTTTTTCCTTTTCCTCCTAGTCTCTTCCCTGCTTAAGTTTTTTCTTCGT
TTTTCTTCGTCTGTCTTGGGTACCCTCGCTTTTTCCCTCTTTCTCTATTA
TGTTGCTTACTTCTCTCACAACCCTGTATAGNATCACTTTTATTTAATAT
CCCCCCAATCCCTATATCTTTCCTTTTCTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no343_a20.g1 MSMg01no343_a20.g1 CHROMAT_FILE:
MSMg01no343_a20.g1 PHD_FILE: MSMg01no343_a20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:32:44 2005
         (356 letters)



>mm_chr3_89676307_89677061
          Length = 755

 Score =  600 bits (310), Expect = e-176
 Identities = 346/358 (96%), Gaps = 5/358 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   cactcagcgactgagcgcactccccttcgaaataactgggctgtcttcctgcagccaaat 60
           ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 555 cactcagtgactgagcgcactccccttcgcaataactgggctgtcttcctgcagccaaat 496

                                                                       
Query: 61  aacattccgcagattgtttacattgcttgtataacaggccaagagccaacggcagatcca 120
           ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct: 495 aacattccgcagattgtttacgttgcttggataacaggccaagagccaacggcagatcca 436

                                                                       
Query: 121 gagccagctatcaatcatttatcataacaagaacaaggaatagtctgctggtttcaagcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 gagccagctatcaatcatttatcataacaagaacaaggaatagtctgctggtttcaagcc 376

                                                                       
Query: 181 ccaaaaaatgcccaactcttgtttatgacattggctttccctcccccaccctagcacttc 240
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 cc-aaaaatgcccaactcttgtttatgacattggctttccctcccccaccctagcacttc 317

                                                                       
Query: 241 cttaggtaatggcagctgatgggatt-gggggaggagggtcaccttattctcattttgga 299
           |||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||
Sbjct: 316 cttaggtaatggcagctgatgggattaggggg-ggagggtcaccttattctcactttgga 258

                                                                     
Query: 300 gtcna-tacatagcaagtcagccatagagaaggaagtcaaagggaggagaggaggccc 356
            || | ||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 257 atc-agtacatagcaagtcagccatagagaaggaagtcaaagggaagagaggaggccc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 356
Length of database: 755
Length adjustment: 9
Effective length of query: 347
Effective length of database: 746
Effective search space:   258862
Effective search space used:   258862
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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