BAC Information

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BAC

Clone NameMSMg01-343F23
Chromosome3 (Build37)
Map Location 6,124,520 - 6,124,838
singlet/doubletsinglet
Overlap genenone
Upstream geneZfhx4, Pxmp3, EG620382, EG667759, LOC100041165
Downstream geneLOC100041193, EG620570, LOC100041214, LOC383818, 1700008P02Rik, LOC100039349, Olfr289-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-343F23.T7 (MSMg01no343_f23.b1)MSMg01-343F23.TJ (MSMg01no343_f23.g1)
ACCAG456699AG456700
length781777
length of high quality
(start - end)		413 (35 - 447)391 (65 - 455)
definitionCHROMAT_FILE: MSMg01no343_f23.b1 PHD_FILE: MSMg01no343_f23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:33:11 2005CHROMAT_FILE: MSMg01no343_f23.g1 PHD_FILE: MSMg01no343_f23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:33:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGTCTG
ATTTTTGTTTTGTAAAAGAGTTCTTTCATTCTGACAGTATGGTCAAGAGT
CTGTGAAGGGAGCAAAATTGATTTGAAAGAGATTACTTTAATGATTCATT
TATTGGCTAAGATCAAAAACTCAGGTGACAGCAGATGTTGACAAGGAGGT
GGTAAAAGAGGAGCACTCCTCCATTGTTGATGGGTCTGTAAGCTGGTACA
ACCATTGTGGAACTCAATCTTGTGGTTCTGAGAAAAGTGGACATAGTATT
ACCCAAGGATCCAGTATACACTCCTAGACATATACCCAAAAGATTCTCCA
ACATATAATAACAAGAGCACATGCTCCATTATGTTCATAACAGATTTATT
TATAATAGCCAGAAGCTGGAAAGAACCCAGATGTCCCTCTAACAGAAGAA
TGGATAGAGAAAATGTGGTACATTTACTCAGTAGAGCACTACTCCGCTAT
TTAAAAAATGAATTTATGAAATTCTTAAGCCAATTGTTGGGAACAAAAAA
AAAACTGGCTGGAGGGGGGAACCCCATCCAACAAAGCACACTTGGGAGGG
TTTTTTTTGATATGGTAATTTATGCCCAAAGTTCTTTAAACCCTAACCCA
TTCTTCTTTCCCCTTTTAGTTTTTTAAATAAAAAAAAAACTGGTGGGGGC
CCCCCCCTTTTTCAAGGTGTTACTACTCCCCACAACTATGGGCCGGCTTT
TTTTCTTCTATTCTCTCCTCCTTCTCTCTTG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXACTTTGTAGACCAGGCTGGTCTCAAACTCAGAAATC
CACCTGCCTGTGCCTCCCGAGTGCTGGGATTAAAAGCATGCAACACCACA
CCTGGCAAAAATGGCCTTCTTACCAAAAGCAATCTGTAGATTCAATGAAG
TTCCCATCAAATTTCCAATTAGTTCTTCAAGTTAGAAAGAACCATTCTTA
AATTCATTTGGAACAATGAAGAAATAAACAGGATTGTGAAAACTATTCTC
AAAAAACAAAGAATTTCTGGAGGAAGTCACCATACCTGACCTCAAGCCAT
TCTATAGAGCAATGGTGATAAAAACCATGTGTTGATACAGATCCAGGCAG
TTAGACCAATGGAATAGAGTTGAAGAACCCCAAATAAACCCACACATCTA
TGGTCACTTAATCTTTGACAAAGTAGCNTAAACTAAAGTTAAAATCTGAG
TCTATTCTAGAACAAGAGGCACCCCAGCTTTGAGAAATGCTTGTTGCCCT
GAAGGAAAAGGAAAACCCAAGTCTAACCGAAAAAACCTGGGCCTAAAACT
GCGAAGAAATGAAATTTTCTAAAAGAGAATGTTATGTTCCCCACAAGATA
GGAATCTGGACCCCTTCCCCTGTGGAGGAAATCAGGGTCTCTTCCCCCTC
GCGTCTATAAAAAAAGGGGCGCGAAACTATAAAAAAAGGGGGTTTTTTCT
ATTCAAAAATACTGGAAAATGCCCGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no343_f23.b1 MSMg01no343_f23.b1 CHROMAT_FILE:
MSMg01no343_f23.b1 PHD_FILE: MSMg01no343_f23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:33:11 2005
         (413 letters)



>mm_chr3_6124520_6125332
          Length = 813

 Score =  580 bits (300), Expect = e-170
 Identities = 315/320 (98%), Gaps = 2/320 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagtctgatttttgttttgtaaaagagttctttcattctgacagtatggtcaaga 64
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 319 gaattcagtctgatttttgttttgtgaaagagttctttcattctgacagtatggtcaaga 260

                                                                       
Query: 65  gtctgtgaagggagcaaaattgatttgaaagagattactttaatg-attcatttattggc 123
           ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct: 259 gtctgtgaagggagcaaaattgatttgaaagagattactttaa-gaattcatttattggc 201

                                                                       
Query: 124 taagatcaaaaactcaggtgacagcagatgttgacaaggaggtggtaaaagaggagcact 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 taagatcaaaaactcaggtgacagcagatgttgacaaggaggtggtaaaagaggagcact 141

                                                                       
Query: 184 cctccattgttgatgggtctgtaagctggtacaaccattgtggaactcaatcttgtggtt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140 cctccattgttgatgggtctgtaagctggtacaaccattgtggaactcaatcttgtggtt 81

                                                                       
Query: 244 ctgagaaaagtggacatagtattacccaaggatccagtatacactcctagacatataccc 303
           || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 80  ctcagaaaagtggacatagtattacccaaggacccagtatacactcctagacatataccc 21

                               
Query: 304 aaaagattctccaacatata 323
           ||||||||||||||||||||
Sbjct: 20  aaaagattctccaacatata 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 413
Length of database: 813
Length adjustment: 9
Effective length of query: 404
Effective length of database: 804
Effective search space:   324816
Effective search space used:   324816
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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