Query= MSMg01no343_g12.b1 MSMg01no343_g12.b1 CHROMAT_FILE:
MSMg01no343_g12.b1 PHD_FILE: MSMg01no343_g12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:33:13 2005
(260 letters)
>mm_chr3_100914313_100914972
Length = 660
Score = 489 bits (253), Expect = e-143
Identities = 256/257 (99%)
Strand = Plus / Minus
Query: 4 ggaattcactgcctttgcagctctttcattcctatctgtgtaattatttttagcaagggc 63
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 ggaattcactgcctttgaagctctttcattcctatctgtgtaattatttttagcaagggc 401
Query: 64 taagcaggtggctggtggcatgcttagctggagaccagagggtgtacgtgtgggttgctg 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 taagcaggtggctggtggcatgcttagctggagaccagagggtgtacgtgtgggttgctg 341
Query: 124 gctgcgagacactcgtggggattccaccgcgaaggaatgccgggcgtcccgggatagggc 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 gctgcgagacactcgtggggattccaccgcgaaggaatgccgggcgtcccgggatagggc 281
Query: 184 ccaaaagatgaggtttccagacaagtcttccaggccaacttttaaaggtcggaggaaagt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 ccaaaagatgaggtttccagacaagtcttccaggccaacttttaaaggtcggaggaaagt 221
Query: 244 ttttcgagggctggggg 260
|||||||||||||||||
Sbjct: 220 ttttcgagggctggggg 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 260
Length of database: 660
Length adjustment: 9
Effective length of query: 251
Effective length of database: 651
Effective search space: 163401
Effective search space used: 163401
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no343_g12.g1 MSMg01no343_g12.g1 CHROMAT_FILE:
MSMg01no343_g12.g1 PHD_FILE: MSMg01no343_g12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:33:13 2005
(367 letters)
>mm_chr3_100730347_100731113
Length = 767
Score = 627 bits (324), Expect = 0.0
Identities = 354/364 (97%), Gaps = 2/364 (0%)
Strand = Plus / Plus
Query: 1 ctaactctttgggagtcacagatcactctgagactcttctttcccagaagtagccactaa 60
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctaattctttgggagtcacagatcactctgagactcttctttcccagaagtagccactaa 260
Query: 61 gttgggcacagagtttcgagg-gtttcctaacaccctccccctaccctcatcccccagtg 119
||||||||||| |||||| || |||||||||||||||||||| |||||||||||||||||
Sbjct: 261 gttgggcacagtgtttcg-ggagtttcctaacaccctccccccaccctcatcccccagtg 319
Query: 120 tacctctgtacaacacctggtagttcacaaactaggcctgagaaacccagctttgtcttc 179
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 320 tacctctgtacaacacctggtagttcacaaactaggcttgagaaacccagctttgtcttc 379
Query: 180 atgctggcccacaggctatggcaccctggcgttagcttctgagtggcagaggctctcaca 239
||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 380 atgctggcccataggctatggcaccctggcgttagcttctgagtggcagaggttctcaca 439
Query: 240 acagggaagttgcaagctggacttcagtatctttcacctcttctaggaggacccagggct 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 acagggaagttgcaagctggacttcagtatctttcacctcttctaggaggacccagggct 499
Query: 300 tatagaagatggttttgagggtccagtctcatacaagcctaaaggctgtctttgggcttt 359
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 500 tatagaagatagttttgagggtccagtctcatacaagcctaaaggctgtctttgggtttt 559
Query: 360 gcag 363
||||
Sbjct: 560 gcag 563
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 367
Length of database: 767
Length adjustment: 9
Effective length of query: 358
Effective length of database: 758
Effective search space: 271364
Effective search space used: 271364
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
