Query= MSMg01no343_i04.b1 MSMg01no343_i04.b1 CHROMAT_FILE:
MSMg01no343_i04.b1 PHD_FILE: MSMg01no343_i04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:33:22 2005
(269 letters)
>mm_chr3_89663834_89664505
Length = 672
Score = 443 bits (229), Expect = e-129
Identities = 255/267 (95%), Gaps = 7/267 (2%)
Strand = Plus / Plus
Query: 4 gaattcgtgtgtaattacagaggatgtttacatgcagcaatgctccttctgccccatctg 63
|||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattcgtgtgtaaggaaagaggatgtttacatgcagcaatgctccttctgccccatctg 263
Query: 64 gggagtcagagtaatgcttttttagaattcagact-----tttatttgtaagagcccagg 118
||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct: 264 gggagtcagagtaatgcttttttagaattcagactgaacat--atttgtaagagcccagg 321
Query: 119 ttcaggtcctgagtgttggattcccgcactgtgaaggggcgaaggtgtaaggagcctcct 178
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 322 ttcaggtcctgagtgttggattcctgcactgtgaaggggcgaaggtgtaaggagcctcct 381
Query: 179 ttttcaaataaggatctcaatgctcagctgatcaatgtgtcctgggttagtcacatggga 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 ttttcaaataaggatctcaatgctcagctgatcaatgtgtcctgggttagtcacatggga 441
Query: 239 agcaacgggcataccaggtctgcctca 265
||||||||||| |||||||||||||||
Sbjct: 442 agcaacgggcagaccaggtctgcctca 468
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 269
Length of database: 672
Length adjustment: 9
Effective length of query: 260
Effective length of database: 663
Effective search space: 172380
Effective search space used: 172380
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no343_i04.g1 MSMg01no343_i04.g1 CHROMAT_FILE:
MSMg01no343_i04.g1 PHD_FILE: MSMg01no343_i04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:33:22 2005
(248 letters)
>mm_chr3_89848192_89848839
Length = 648
Score = 464 bits (240), Expect = e-135
Identities = 246/248 (99%)
Strand = Plus / Minus
Query: 1 cataaagccatgctttggagcacacatttgtaatcccagtttttgttcttactgtgagat 60
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 448 cataaagccatgctttggagcacacatttgtaatcccagtgtttgttcttactgtgagat 389
Query: 61 gggtgatgaggacaggagaatccctttctgttttatacagtggtgaaaacaaaaagagag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 gggtgatgaggacaggagaatccctttctgttttatacagtggtgaaaacaaaaagagag 329
Query: 121 acttgtctcaaggtagaaatacaggactgataccaaggttgtcttgtaacctctatgtat 180
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 328 acttgtctcaaggtagaaatacaggactgataccaaggctgtcttgtaacctctatgtat 269
Query: 181 gagctgtggtacacacattcctgccacacattcctgcccccatatgtatgtgtgtgtgtg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 gagctgtggtacacacattcctgccacacattcctgcccccatatgtatgtgtgtgtgtg 209
Query: 241 tacacata 248
||||||||
Sbjct: 208 tacacata 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 648
Length adjustment: 9
Effective length of query: 239
Effective length of database: 639
Effective search space: 152721
Effective search space used: 152721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
