XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCCTTCACTG
TAGCTAAGGAGCAGAGAGCAATAATATGACAGAAGATAAGACAGTCTCTT
CAAGCTCATGCCCCAAGTCACCTATATCCTCTGCCTTCAATACTACCTTC
TAAAGTTTAAACTATTTCTAAATGTAGTCTCACTAACTGAGGGTCACAAA
CACATTCAAAATAAATGCAAGTTGAGAACCTGTTGTATGCAAACCATAAG
ATTCTGTGTAGGTGATAAAAAGTCAATGATAAATATATACTTCCCAGCTA
TCAGGACAACTCAAGGACATGTGTTCATTTAAATCCTCATGTTGAAATGG
AAGGTATCTGTGCATATGCCAATGGGCCTTGACTCCTTTCATTTTAGCAT
TGCTCCCACCGCTGCTGCTCATTTGCCACAGTGTGTGTGTGCAGTACTTA
CCTGCTTGCCTAGGAAAGGTGGTGAATATTTTGTCACATGCCTCCAGTTT
AAACAGTGTCCTCCTTGATTTATTATGTGCTGCCTATAATTACTGTTTCT
TATCCATTGCAACTACTCCATGTGGATCTGACTAACTATAAATATTCCAG
TTTCAAGAGCTCTTAGACCACTCTTGATTGTATGTCTGACTGCTCTGATC
ATTCAAACTTCTTTCTAAATAATACATGGCGTTAGCTTGTCCTCTATTTG
CTGCTGTTTTTCCCCAACGACCTATCTAACCTCCCTAACATTTCTACCCT
TATTACG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTGACAAAGACCACAAACCACCCTGACCTTGTTGCGAGAATT
CCATTGAGGTTAATAGCTGTGACGTTAATGTACTATTATTTTGCTGACCA
AATTATAATAACCCACCATGGGGGCAAGCAAAGTGAGTCCCTAGGCCAAA
GGATTACTTAGTGACTATACAAACCAACCAATGCCTAAAAGGGTTACTCG
CTACACCATTGAGAACCCTATTGCTCAAATCTGCCCCTTACAAAGGTATA
AAAAGTGTGTTCTTTCTTTGTCCTTGGTCTTTCCTCTGGCCTGCGTGCTA
GTGGGGGAGTCCCCAGCATGTTGGATCAATAAAAATCCTCATTCGTTTTG
CAGCGATGGCGGCGGTCTCTGTGGTCCTTGTGAGTAAGGGTCTTTTGACG
AACTCCAACACCATTACGAACTAGGTTTCTTGTGCTCAGTACTAGAAATT
TTGTTAGCCTATGGTTGTTGGGAGCACTTTTAGTCCAAGTGTCTTAAATT
TCTGTAAGATTTTCTCTTTTTCTGTCTCCCTCTCACTGCATGCATATATA
TACTTACTTATATGCAATGTGTATAATTAATGGGTATATAAAATAACATG
ACTTCTTCCTCTTCCATACTGGGAGATCGTGGACATTGCCCACACATACT
TCCCCCACTACCAGTTTTTTTTATTGTTCTAACTCCCATTTCTGCTTCCT
TTATG

Query= MSMg01no343_p16.b1 MSMg01no343_p16.b1 CHROMAT_FILE:
MSMg01no343_p16.b1 PHD_FILE: MSMg01no343_p16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:34:01 2005
         (540 letters)



>mm_chr3_11239886_11240828
          Length = 943

 Score =  636 bits (329), Expect = 0.0
 Identities = 394/417 (94%), Gaps = 3/417 (0%)
 Strand = Plus / Minus

                                                                       
Query: 127 atttctaaatgtagtctcactaactgagggtcacaaacacattcaaaataaatgcaagtt 186
           |||||||||| |||||||| ||||||||||||||| ||||||||||||||| ||||||||
Sbjct: 743 atttctaaatctagtctcagtaactgagggtcacacacacattcaaaataagtgcaagtt 684

                                                                       
Query: 187 gagaacctgttgtatgcaaaccataagattctgtgtaggtgataaaaagtcaatgataaa 246
           |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| ||
Sbjct: 683 gagaacctgttgtatgcaaaccataagattctgtataggtgataaaaagttaatgatgaa 624

                                                                       
Query: 247 tatatacttcccagctatcaggacaactcaaggacatgtgttcatttaaatcctcatgtt 306
           ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 tatatacttcccagccattaggacaactcaaggacatgtgttcatttaaatcctcatgtt 564

                                                                       
Query: 307 gaaatggaaggtatctgtgcatatgcc---aatgggccttgactcctttcattttagcat 363
           | ||||||| |||||| ||||||||||   || |||||||||||||||||||||||| ||
Sbjct: 563 ggaatggaaagtatctctgcatatgccttgaaagggccttgactcctttcattttagtat 504

                                                                       
Query: 364 tgctcccaccgctgctgctcatttgccacagtgtgtgtgtgcagtacttacctgcttgcc 423
           |||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 503 tgctcctactgctgctgctcatttgccacactgtgtgtgtgcagtacttacctgcttgcc 444

                                                                       
Query: 424 taggaaaggtggtgaatattttgtcacatgcctccagtttaaacagtgtcctccttgatt 483
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 443 taggaaaggtggtgaatattttgtcacatgcccccagtttaaacagtgtcctccttgatt 384

                                                                    
Query: 484 tattatgtgctgcctataattactgtttcttatccattgcaactactccatgtggat 540
           |||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct: 383 tattatgtgctgcctataattactgtttcttatcaattgcaaatactccatgtggat 327


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 943
Length adjustment: 10
Effective length of query: 530
Effective length of database: 933
Effective search space:   494490
Effective search space used:   494490
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)