Query= MSMg01no344_d13.b1 MSMg01no344_d13.b1 CHROMAT_FILE:
MSMg01no344_d13.b1 PHD_FILE: MSMg01no344_d13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:34:20 2005
(517 letters)
>mm_chr3_4521605_4522521
Length = 917
Score = 586 bits (303), Expect = e-171
Identities = 320/327 (97%), Gaps = 3/327 (0%)
Strand = Plus / Minus
Query: 194 gaaaattcttgcaaactgaatccaagaatacatcagggccatcatttaccacaatcaaga 253
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 917 gaaaattcttgcaaactgaatccaagaatacatcagggccatcatttaccacaatcaaga 858
Query: 254 aaaaaaatcacatgatcatctccttggatgctgaaaaggcatttg---aaaaaaaaaaag 310
||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct: 857 aaaaaaatcacatgatcatctccttagatgctgaaaaggcatttgaaaaaaaaaaaaaag 798
Query: 311 acatcacccgttcatgttaaaatattggagagatcaggaattcaatgccaatatcgaaac 370
||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 797 acatcaccccttcatgttaaaatattggagagatcaggaattcaatgcccatatcgaaac 738
Query: 371 ataataaaaaacaatttactattctaacatgttttattatattcatattcattagtaata 430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 ataataaaaaacaatttactattctaacatgttttattatattcatattcattagtaata 678
Query: 431 tagttcaacaatattttcttatattatcagtttttatcaagttttgaacttcaaaagatg 490
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 677 tagttcaacaatattttcttatattatcagtttttatcaagttttgaatttcaaaagatg 618
Query: 491 aactagaaaagcttctatttctataat 517
|||||||||||||||||||||||||||
Sbjct: 617 aactagaaaagcttctatttctataat 591
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 917
Length adjustment: 10
Effective length of query: 507
Effective length of database: 907
Effective search space: 459849
Effective search space used: 459849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no344_d13.g1 MSMg01no344_d13.g1 CHROMAT_FILE:
MSMg01no344_d13.g1 PHD_FILE: MSMg01no344_d13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:34:20 2005
(521 letters)
>mm_chr3_4393768_4394688
Length = 921
Score = 992 bits (513), Expect = 0.0
Identities = 519/521 (99%)
Strand = Plus / Plus
Query: 1 agaaactcctgtaggtaggagattgatgttttgatcatctcaatgtgcagatctacagtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agaaactcctgtaggtaggagattgatgttttgatcatctcaatgtgcagatctacagtg 260
Query: 61 gccctgaggttctggtattggtgatcttgtggcaccaatgaagaggtatcagtagccatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gccctgaggttctggtattggtgatcttgtggcaccaatgaagaggtatcagtagccatt 320
Query: 121 cctgtcactcccagccttaagagcaatcacactgtgagcctcaagaagggttcccttctt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctgtcactcccagccttaagagcaatcacactgtgagcctcaagaagggttcccttctt 380
Query: 181 gttcaggagggggtactgtcccatcaatctagaagctctccttatgggtggtaaataagc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gttcaggagggggtactgtcccatcaatctagaagctctccttatgggtggtaaataagc 440
Query: 241 ctttggaacaattggaccagtacatagaaatcagaagacaggtccaggacagtagagtgc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctttggaacaattggaccagtacatagaaatcagaagacaggtccaggacagtagagtgc 500
Query: 301 acacaaggggccaatcctgaggcacaagcccaccatccatatggggtcttttgcaggaca 360
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 501 acacaaggggccaatcctgaggcacaagcccactatccatatggggtcttttgcaggaca 560
Query: 361 ctcaactttggatacaggcaccttaagacccactctccaaggccacttctgggacacagt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctcaactttggatacaggcaccttaagacccactctccaaggccacttctgggacacagt 620
Query: 421 ttagattcacaagtccctcgtcctccacattcagataatccctactcctatgtttctagg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttagattcacaagtccctcgtcctccacattcagataatccctactcctatgtttctagg 680
Query: 481 gtaggggatattccaggagtcatgtcctactgctagcttaa 521
||||||||||||||||||||||| |||||||||||||||||
Sbjct: 681 gtaggggatattccaggagtcatatcctactgctagcttaa 721
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 521
Length of database: 921
Length adjustment: 10
Effective length of query: 511
Effective length of database: 911
Effective search space: 465521
Effective search space used: 465521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
