GGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCTAGATAGGATGGCAGGTACCTGGGCAGAAGGGTAAAAGGCT
ACCGGTGTTTGTAAGTGGTAACAGAAGGCTTTCTCTTGTTGGTACCCTAC
ACCAAGCTACACTGTCACTTCTTTTTCCTTGTTGTGGTTTGGTTGGTTTG
TTTTCTCTACATAGCCCCTTTACCTTCCTAGCCTTGGCTGGCCTGAACCT
TGCTGTTCTTGAACTCAGTGATTTTCCTGTCTTGCTGGGATAAAACTTTG
AGCTACCACCCAGAAGGAAGCACTCCTGCTGAGGTTAGACTGGGGTCTCT
TCCAGGTTCCTCAGCTATGAACATGCAAACAGCTGGCCTGGTCTTTCTTT
TTTTCCTTTTTCTTTTTAAGATTTATGTATTTATTATATTTAAGTACACT
GTAGCTGTCTTCAGACACTCCAGAAGAGGGTTTCAGATTCTGGAGAATCT
AAATCCCTCTTCTTGTCTGCATATGATGTATATAAACACAGCCTCACATA
TACTCATAAAAATTGAAAGATGGGTCTACAGAAATGGCTCACCTGTTAAT
AACAGTGTTTTCTCCTTCATAATAATCTGGTGTCTATTATTCTTAAAATA
TACACAAATATATATTTATTATTAAATACTTCAATAACCTTATTTAAATC
TTCATTTCTATACTACAAATTAATTATAATAGTATTTCCTTTG

CGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAAGGCCCATACCTAAACATGATAAA
AGCAATCTACAGGAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGC
TGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCT
CCCTACCTTTTCAACATAGTACTTGAAGTATTAGCCAGAGCAATTCGACA
ACAAAAGGAGATCAAGGGGATACAAATTGGAAAAGAGGAAGTCAAAATAT
CACTTTTTGCAGATGACATGATAGTATATATAAGTGACCCTAAAAATTCT
ACCAGAGAACTCCTAAACCTGATAAACAGCTTCGGTGAAGTAGCTGGATA
TAAAATAAACTCAAACAAGTCAATGGCCTTTCTCTATACAAAGAATAAAC
AGGCTGAGAAAGAAATTAGGGAAACAACACCCTTCTCAATAGTCACAAAT
AATATAAAATATCTTGGCGTGACTCTAACTAAGGAAGTGAAAGATCTGTA
TGATAAAAACTTCAAATCTCTGAAGAAAGAAATTAAGGAAGATCTCAGAA
GATGGAAAGATCTCCCATGCTCATGGATTGGCAGGATCAACATTGTAAAA
ATGGCTATCTTGCCAAAAGCAATCTACAGATTCAATGCAATCCCCATCAA
AATTCCAACTCAATTCTTCAACGAATTGGAA

Query= MSMg01no344_e10.b1 MSMg01no344_e10.b1 CHROMAT_FILE:
MSMg01no344_e10.b1 PHD_FILE: MSMg01no344_e10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:34:24 2005
         (492 letters)



>mm_chr3_3170628_3171517
          Length = 890

 Score =  371 bits (192), Expect = e-107
 Identities = 428/546 (78%), Gaps = 73/546 (13%)
 Strand = Plus / Plus

                                                                       
Query: 8   ttcctagataggatggcaggtacctgggcagaagggtaaaaggctaccggtgtttgtaag 67
           |||||||| |||| |||||| ||||||||||||||||  |||||||| ||||||||||||
Sbjct: 208 ttcctagaaaggaaggcaggaacctgggcagaagggtgcaaggctactggtgtttgtaag 267

                                                                       
Query: 68  tggtaacagaa-ggctttctcttgttggtacccta-caccaagctacactgtcacttctt 125
           |||||||| || ||| |||||||| |||||||||| |  ||||||||||||||||||| |
Sbjct: 268 tggtaaca-aatggccttctcttgctggtaccctatc-tcaagctacactgtcacttcat 325

                                                                       
Query: 126 tttccttgttgtggtttggttggtttgttttctctacatagcccctttaccttcctagcc 185
           |||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 326 tttctttgttgttgtttggttggtttgttttctctacatagcccctttcccttcctagcc 385

                                                                       
Query: 186 ttggctggcctgaaccttgctgttc-ttgaactcagtgattttcctgtcttgctgggata 244
           |||| |  ||||||||  |||| || ||  ||| |||||||| |||||||||||||||| 
Sbjct: 386 ttggttttcctgaaccaggctg-tctttccactaagtgatttgcctgtcttgctgggatt 444

                                                                       
Query: 245 aaactt-tgagctaccacccagaaggaagcactcctgctgaggttagactggggtctctt 303
           ||  || | |||||||| |||||||||||| | ||| ||||||  |||||||| ||||| 
Sbjct: 445 aatgttataagctaccatccagaaggaagctc-cctcctgaggccagactgggttctcta 503

                                                                       
Query: 304 ccaggttcctcagctatgaacatgcaaacagctggcctggtctttctttttttccttttt 363
           |||| |||| |  |||||||||||||||  || |||||||||||||| ||||  ||| ||
Sbjct: 504 ccagtttcc-c--ctatgaacatgcaaatggcaggcctggtctttctatttt--cttatt 558

                                                                       
Query: 364 ctttt---taa----------------------------------------g-------- 372
           |||||   |||                                        |        
Sbjct: 559 cttttatataattatttatgtatgtatgtatgtatgtatgtatgtatgtatgtatttatt 618

                                                                       
Query: 373 ---------atttatgtatttattatatttaagtacactgtagctgtcttcagacactcc 423
                    |||||| |||||||||||| |||||||||||||||||| ||||||||||||
Sbjct: 619 tatttatttatttatttatttattatatgtaagtacactgtagctgtattcagacactcc 678

                                                                       
Query: 424 agaagagggtttcagattctggagaatctaaatccctcttcttgtctgcatatgatgtat 483
           |||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct: 679 agaagagggtgtcagattctggagaatctaaatccctcttcttgtctccatatgatgtgt 738

                 
Query: 484 ataaac 489
           ||||||
Sbjct: 739 ataaac 744


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 890
Length adjustment: 10
Effective length of query: 482
Effective length of database: 880
Effective search space:   424160
Effective search space used:   424160
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)