CTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCACCTGACGAATACCGAATGGCAGAGAAGCACCTGAAAAAATGTT
CAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTC
CACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAG
ATGCTGGCATGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGG
ATTGCAGGCTTGTACATCCACTCTGGAAATCAGTCTGGTGGTTCCTCAGA
AAATTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGCAT
ATATCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCACTATCT
TCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGC
CCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATGGA
GTACTACTCAGCTATTANAAAGAATGAATTTATGATATTCCTAGCCAAAT
GGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACAAAGG
AACTCACACAATATGTACTCCCTGATAAGTGGATATTGGCCCCCAACCTA
GGATACTCCAGAAATAAGATACATTTTGCTTAACCCTTGAGATTTCATAA
ATAAGGAAACTGGATTGGGGACACTATGCCCCTCCCTTAAAATTTGGGAA
CAAAA

TGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTAGAAAATGCTTTGTGTTTCCTTGCCCCAATTTC
TTTCAAAAAATTACATTAAAATAACAGGACTGACTTCAGCACACAAGAAC
CATGTTTCCTGAACTAGAAGCCTCTACTGTAGTACTGGAAACTGACAACG
AATTAGTCTGCAGAATTTGGATGTTAAGTCCATTTCTTAGCCTTGAGAAA
TCACTTAAGCTTTTCTCTTCTTGGCTTCTCCATCTGTAAAATAGGACACT
CACACCACATATTATTTTTTAATGAAAGAACGTATTACTTCTATACATAC
CTTTGTGTAATTAGAATGATGCTTGATACATATTCAGTAAATATTACATT
AGTTATGAAAATTAAATACTTAGAAATTCAAAGATGTACATAGGAGGTAA
GCAAACCAATCTCCCTATTATTTTAGTCATTAAATTGTGAGTCATTTGCA
GATTATAATTTATTGAATGTTCACGGACTGCTACGCATCCCTTCTACGTC
CTTTCTTATTATGGTTTAACTCTTTTGGCACACTCCGTCTTTTCTTATAA
ACCGTGAATTTCTCCAGGGTATGCCTTTGGTCTCCTTTGACTTGTATCTT
TTTCGGTCACAGCCCTACGTTTAAAAATCCTGCAACTCTTGTGGCACTTG
CTTTCTGGCTAATGATAACTACCTCTCTTTTT

Query= MSMg01no344_k09.g1 MSMg01no344_k09.g1 CHROMAT_FILE:
MSMg01no344_k09.g1 PHD_FILE: MSMg01no344_k09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:34:54 2005
         (412 letters)



>mm_chr3_79723443_79724253
          Length = 811

 Score =  723 bits (374), Expect = 0.0
 Identities = 401/418 (95%), Gaps = 15/418 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   tagaaaatgctttgtgtttccttgccccaatttctttcaaaaaattacattaaaataaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 tagaaaatgctttgtgtttccttgccccaatttctttcaaaaaattagattaaaataaca 260

                                                                       
Query: 61  ggactgacttcagcacacaagaaccatgtttcctgaactagaagcctctactgtagtact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggactgacttcagcacacaagaaccatgtttcctgaactagaagcctctactgtagtact 320

                                                                       
Query: 121 ggaaactgacaacgaattagtctgcagaatttggatgttaagtccatttcttagccttga 180
           ||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 321 ggaaactgagaacgaattagtctgcagaatttggatgttaagtc-atttcttagccttga 379

                                                                       
Query: 181 gaaatcacttaagcttttctcttcttggcttctccatctgtaaaataggacactcacacc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gaaatcacttaagcttttctcttcttggcttctccatctgtaaaataggacactcacacc 439

                                                                       
Query: 241 acata------ttattttttaatgaaagaacgtattacttctatacatacctttgtgtaa 294
           |||||      |        ||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 acatagagggct--------aatgaaagaacgtattacttctatacatacctttgtgtaa 491

                                                                       
Query: 295 ttagaatgatgcttgatacatattcagtaaatattacattagttatgaaaattaaatact 354
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 ttagaatgatgcttgatacatattcagtaaatattacattagttatgaaaattaaatact 551

                                                                     
Query: 355 tagaaattcaaagatgtacataggaggtaagcaaaccaatctccctattattttagtc 412
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 tagaaattcaaagatgtacataggaggtaagcaaaccaatctccctattattttagtc 609


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 412
Length of database: 811
Length adjustment: 9
Effective length of query: 403
Effective length of database: 802
Effective search space:   323206
Effective search space used:   323206
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)