BAC Information

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BAC

Clone NameMSMg01-344P06
Chromosome3 (Build37)
Map Location 97,407,896 - 97,408,169
singlet/doubletsinglet
Overlap geneChd1l
Upstream gene6330549D23Rik, Rbm8a, Pex11b, Itga10, Ankrd35, Pias3, Polr3c, Zfp364, Cd160, Pdzk1, Gpr89, Gja8, 9230114J08Rik, Gja5, Acp6, Bcl9, Olfr1402
Downstream geneFmo5, Prkab2, Pde4dip, Sec22b, EG433632, LOC100042975, Notch2, Adam30, LOC622561, Reg4, Hmgcs2, Phgdh, Zfp697, LOC100043461, Hsd3b4, LOC100043456, EG545555, LOC676433
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-344P06.T7 (MSMg01no344_p06.b1)MSMg01-344P06.TJ (MSMg01no344_p06.g1)
ACCAG457892AG457893
length788856
length of high quality
(start - end)
273 (79 - 351)181 (73 - 253)
definitionCHROMAT_FILE: MSMg01no344_p06.b1 PHD_FILE: MSMg01no344_p06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:35:18 2005CHROMAT_FILE: MSMg01no344_p06.g1 PHD_FILE: MSMg01no344_p06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:35:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCTACGCGATCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCATTTTTGTCCTACAGTATCTGCTTTCTGGGTCTCTCA
GGATAGCTCCATGTGAATGTAGTGCCCTGCGGTTTCTAAATTCACTAGCT
AACTAATGGGGTTAAAGGAAGCAGTGTAAAGTGTAGAGACCTGGAGAGTC
TGGTTGTTAGGACGAGGTTAGGCAGGCAGAGTGCTGATGTAGACACTTCA
GCCAGGACGGTGAGCACAACTGCCTTGGGTTGACATGTCATTTGGGGTTT
GGTTGATAGACAGTCCAGTTACATCATTTTTTATGAGTTAATCACATGGG
AGGGGGGAGGTCCTAATCTATACAATATTATCGCCAGGTTATTCAGGATG
TATATGCATTTGTTTTTGTGCCCCCCTCTTCTCAGACCTGATATTCGTCG
CTCTTATCAGTCTTTTGAAAATCGTGTGTATGTTTTGACCTGCTTCGACC
CTATTGCACTAGTTTCTTTGGTAGACTTGTCGTCTTATATGTATTTTCCT
TTTTGTGCTACACTATTTGATCTCTTTCATTTCTTTGCCTTTCTATTATT
GAGTGTTTTATACTGCCCTTTTTCTTTTCTTCTATTTACTTTATATATTT
TTTCGCATTTATATCTCTTACTCTCCTCTATATTTTATTCAGTCTTTTTC
TTTTTATTTCTGTTTATTGTATATATTTTTTAATCTCCTTATTTATTTCT
ATTTCTTTTTTTTTCTACTTTCACAACTTCTAGTGGTG
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCCATAGCTGAACGAAATGAGCCTAATGC
TCTTTTTATAGACTTTTGGTCTCATTTTGCTTTGTTCGGGCTTTTTGTTT
TGTTTAATTGGTCTTTTGCTTATATATTTTGTTTCCCATTTTTGTGAATG
AGTGAGTAAGTGAGTGAGTGAGTGAGTGAGTGAATGAGTGTGTGTTGCTT
TTGCTTTGTTTTGTTCTTTTTTTTGAGATAGAGTCATATAATTTAATTAT
GAAGATGAGTTAAATTTTTTTTTTTAATAATTTTATCCCTCTCTTTCTTT
TTTTATTCCTTCCTTTCATTTTTTTATTTCCACATATTTTTTTTTTCTAT
ATTTCTTATTATTATTAGTGTTTCCCCCCCTTTTTTTTATTTTTTTATTT
ACTTCCCCCCTACTCCTTATCTTTAAATCTATTCTTACATTTTTCTATTT
CATTTTATCTTTGATTCTAATTCTTTATTCTTTACCTCTTCTCTCTTTCT
CATTTGATTTTCATTTTTTATCTTTTTTCAATTCTATATTACACATATAC
AGACATATATTTACTTCTATTGTTTTATATTGTCTCATTTTCTTATTCTT
CCCTTATTTTCTTTTATTATTATTATTTTTTTTTATTTCTTTATTATTTA
TTAATCCACCGATCTTTTCTTTTTCTTGGTTACTTCGTTTTTTGTTCTTT
TAATTTTTTATTGTATTATCGCTTTCATTCTATTGTTACCCATATTTTTT
TAATCTCTTCTCTCTCTCTATCCTATTCTTTTTTTTACTTCTTCCCGCTA
TTCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no344_p06.b1 MSMg01no344_p06.b1 CHROMAT_FILE:
MSMg01no344_p06.b1 PHD_FILE: MSMg01no344_p06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:35:18 2005
         (273 letters)



>mm_chr3_97407696_97408369
          Length = 674

 Score =  449 bits (232), Expect = e-130
 Identities = 264/280 (94%), Gaps = 13/280 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatctgctttctgggtctctcaggatagctccatgtgaatgtagtgccctgcggtttcta 60
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 474 tatctgctttctgggtctctcaggatagctccgtgtgaatgtagtgccctgcggtttcta 415

                                                                       
Query: 61  aattcactagctaactaatggggttaaaggaagcagtgtaaagt-gtagagacctggaga 119
           |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 414 aattcactagctaactaatggggttaaaggaagcagtgtaaa-tcgtagagacctggaga 356

                                                                       
Query: 120 gtctggttgttaggacgaggttaggcaggcagagtgctgatgtagacacttcagccagga 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 gtctggttgttaggacgaggttaggcaggcagagtgctgatgtagacacttcagccagga 296

                                                                       
Query: 180 cggtgagcacaactgccttgggttgacatgtcatttggggtttgg-ttgatagacagtcc 238
           ||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct: 295 cggtgagcaaaactgccttgggttggcatgtcatttggggtttgggttgatagacagtcc 236

                                                   
Query: 239 agttacatcatttttta-----tgagttaatcacatggga 273
           |||||||||||     |     ||||||||||||||||||
Sbjct: 235 agttacatcat-----accacatgagttaatcacatggga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 273
Length of database: 674
Length adjustment: 9
Effective length of query: 264
Effective length of database: 665
Effective search space:   175560
Effective search space used:   175560
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)