Query= MSMg01no345_a13.b1 MSMg01no345_a13.b1 CHROMAT_FILE:
MSMg01no345_a13.b1 PHD_FILE: MSMg01no345_a13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:35:24 2005
(607 letters)
>mm_chr3_38728269_38729275
Length = 1007
Score = 1168 bits (604), Expect = 0.0
Identities = 604/604 (100%)
Strand = Plus / Plus
Query: 4 ggaattcaaggttcccagaggttaaaaaagaaagaaaagaaaagaaaccaaaatgttgaa 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcaaggttcccagaggttaaaaaagaaagaaaagaaaagaaaccaaaatgttgaa 263
Query: 64 agacacttagcaaagtcactgggctaaagagacgcaagacccttctcacttagattgtaa 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 agacacttagcaaagtcactgggctaaagagacgcaagacccttctcacttagattgtaa 323
Query: 124 ctctctatcagactatcaagtttcccatgggctgctaaatcaaatatgtgctttcttctt 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ctctctatcagactatcaagtttcccatgggctgctaaatcaaatatgtgctttcttctt 383
Query: 184 ttaatgacaagaagcaaaacaaaaacaaaaaaacaacaacaaaaccccccaaaattcata 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ttaatgacaagaagcaaaacaaaaacaaaaaaacaacaacaaaaccccccaaaattcata 443
Query: 244 ttttgctgaatataatgaatggtttaaaaactctgtaagattttaataaattgaaagtgg 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ttttgctgaatataatgaatggtttaaaaactctgtaagattttaataaattgaaagtgg 503
Query: 304 ttaaatattatataaactaccaaacctgtgtcacacatatgtagcttacaaaggattctt 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ttaaatattatataaactaccaaacctgtgtcacacatatgtagcttacaaaggattctt 563
Query: 364 cttttttctctggaaaggtaacatatagaaaggtcgtaaaggttgatttctgcatcattt 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 cttttttctctggaaaggtaacatatagaaaggtcgtaaaggttgatttctgcatcattt 623
Query: 424 ttggcacagtttctgaagaaaattgctctttattcataagtccagagacagtttccatgc 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ttggcacagtttctgaagaaaattgctctttattcataagtccagagacagtttccatgc 683
Query: 484 tgtgctgtgcatagtttagcaggtgaacaatgaaacacttccgagccgacttttctcctg 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tgtgctgtgcatagtttagcaggtgaacaatgaaacacttccgagccgacttttctcctg 743
Query: 544 agctgcagaatttcctgaccctttggtggctgctcttgcttcctttgtcattgcccacag 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 agctgcagaatttcctgaccctttggtggctgctcttgcttcctttgtcattgcccacag 803
Query: 604 cttc 607
||||
Sbjct: 804 cttc 807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 607
Length of database: 1007
Length adjustment: 10
Effective length of query: 597
Effective length of database: 997
Effective search space: 595209
Effective search space used: 595209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no345_a13.g1 MSMg01no345_a13.g1 CHROMAT_FILE:
MSMg01no345_a13.g1 PHD_FILE: MSMg01no345_a13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:35:24 2005
(521 letters)
>mm_chr3_38911551_38912472
Length = 922
Score = 940 bits (486), Expect = 0.0
Identities = 513/522 (98%), Gaps = 1/522 (0%)
Strand = Plus / Minus
Query: 1 gagaattatctgcgcccagcacttctcctttaatgcgtagctatgattggatttactggt 60
||||||||||||||||||||||||| |||||||| ||||||||||||||| |||||||||
Sbjct: 722 gagaattatctgcgcccagcacttcccctttaatacgtagctatgattgggtttactggt 663
Query: 61 ttactctaagctctgttctgaattaaagagtttcatgtccttaaggacaccacgatgctt 120
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 662 ttactctaagctctgttctgaattaaagagtttcatgtccttaaggacaccaagatgctt 603
Query: 121 cagaatttcctcagaggggaaacagttttctgttttgagttatacaaaggcatgaacata 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 cagaatttcctcagaggggaaacagttttctgttttgagttatacaaaggcatgaacata 543
Query: 181 tccccatatttggggaataaacttgaaatactaagactcactaagacagtatgctccatc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 tccccatatttggggaataaacttgaaatactaagactcactaagacagtatgctccatc 483
Query: 241 acaggtgacccaaaaagacaaaattagattaccatatgatactatggtttaaaccacatt 300
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 482 acaggtgacccaaaaagacaaaattagattaccatctgatactatggtttaaaccacatt 423
Query: 301 caatgactatcatgatttagatgataagccatgttgtacttcttattctgaaacacaaat 360
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 422 caatgactatcatgatttagatgataatccatgttgtacttcttattctgaaacacaaac 363
Query: 361 aataaacccaatattt-aaaaaaaataccagaaagaaattcaggatatagggcaatttag 419
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 aataaacccaatattttaaaaaaaataccagaaagaaattcaggatatagggcaatttag 303
Query: 420 tagttttagtttcagactttgtgtatgttgtaaatccttcagctgtagtataatgtttga 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 tagttttagtttcagactttgtgtatgttgtaaatccttcagctgtagtataatgtttga 243
Query: 480 tggttgctgtcaaggaagcctcccagaaaatataaggattgg 521
|||||||| |||||||||||||||||||||||||||||||||
Sbjct: 242 tggttgctctcaaggaagcctcccagaaaatataaggattgg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 521
Length of database: 922
Length adjustment: 10
Effective length of query: 511
Effective length of database: 912
Effective search space: 466032
Effective search space used: 466032
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
