Query= MSMg01no345_b01.b1 MSMg01no345_b01.b1 CHROMAT_FILE:
MSMg01no345_b01.b1 PHD_FILE: MSMg01no345_b01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:35:26 2005
(581 letters)
>mm_chr3_125456414_125457394
Length = 981
Score = 1036 bits (536), Expect = 0.0
Identities = 566/578 (97%), Gaps = 8/578 (1%)
Strand = Plus / Minus
Query: 8 gaattctcttttgt---tccttatatgagcatgtaatacatttccagggactgggacatt 64
|||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 gaattctcttttgtaaat--ttatatgagcatgtaatacatttccagggactgggacatt 724
Query: 65 taaaaggatgtgtttggtttatgaatatttgacaatgtgtaataaacttttatattttag 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 taaaaggatgtgtttggtttatgaatatttgacaatgtgtaataaacttttatattttag 664
Query: 125 caattttttaaacaagagtcttgaagttttagtcattttagtatattcctctaaaatcta 184
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 663 caattttttaaacaagagtcttgaagtcttagtcattttagtatattcctctaaaatcta 604
Query: 185 cacctggaactcagtaaacataagcacattttaatctcctctgtacatgttttattt-tt 243
||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||
Sbjct: 603 cacctggaactcagtaaacataagcacattttaatctcctctgtacatg-tttctttctt 545
Query: 244 tatatgttgtaaagaatcattaaaaatataatggcatccctgagtggctaagcatctgga 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 tatatgttgtaaagaatcattaaaaatataatggcatccctgagtggctaagcatctgga 485
Query: 304 agacaactgagttgttaaaaattgtactatgtttatacagtctagacttattataaattt 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 agacaactgagttgttaaaaattgtactatgtttatacagtctagacttattataaattt 425
Query: 364 atcaattaaaatccacttaccattgcttaagtggatcaattgtgaaatataaatttgaaa 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 atcaattaaaatccacttaccattgcttaagtggatcaattgtgaaatataaatttgaaa 365
Query: 424 agtgccctcagcttggggaaatgccatactcaacgagctcttgttggccactgaagcaga 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 agtgccctcagcttggggaaatgccatactcaacgagctcttgttggccactgaagcaga 305
Query: 484 catgttccaaacactgtttatgatattatgctcacactctttgatataacttcaaggaaa 543
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 304 catgttccaaacactctttatgatattatgctcacagtctttgatataacttcaaggaaa 245
Query: 544 cttatttgatataaagaaaaaaatttaaaaagtgattt 581
||||||||||||||||||||||||| ||||||||||||
Sbjct: 244 cttatttgatataaagaaaaaaatt-aaaaagtgattt 208
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 581
Length of database: 981
Length adjustment: 10
Effective length of query: 571
Effective length of database: 971
Effective search space: 554441
Effective search space used: 554441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no345_b01.g1 MSMg01no345_b01.g1 CHROMAT_FILE:
MSMg01no345_b01.g1 PHD_FILE: MSMg01no345_b01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:35:26 2005
(562 letters)
>mm_chr3_125329767_125330728
Length = 962
Score = 963 bits (498), Expect = 0.0
Identities = 548/566 (96%), Gaps = 5/566 (0%)
Strand = Plus / Plus
Query: 1 agaaagataaaaggggaatttaaatacatcacattgctgccaatttgaaaccattcctag 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agaaagataaaaggggaatttaaatacatcacattgctgccaatttgaaaccattcctaa 260
Query: 61 tctttcttttgttgaatacttcctgaaaattatagtaactactacagaaaaaa-tgactt 119
||||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||
Sbjct: 261 tctttcttttgttgaatacttcctgaaaattatagtaactactac-gaaaaaaattactt 319
Query: 120 ttgaatttgtagtgagttatctttacaagagtaaaagctatgtctagtgagcctcgtgac 179
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 320 ttgaatttttagtgagttatctttacaagagtaaaagctatgtctagtgagcctcgtggc 379
Query: 180 acccatctttaacaacaacatataggatgcagaggcaggtagatctcagagttggaggcc 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 acccatctttaacaacaacatataggatgcagaggcaggtagatctcagagttggaggcc 439
Query: 240 agcctggtctacagagggtattctagagcagtcaagactacatagagaaatcttgtcttg 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 agcctggtctacagagggtattctagagcagtcaagactacatagagaaatcttgtcttg 499
Query: 300 aaaaaaaaaaaaaaaaaaagaaaagaaaattaattaaaagttatgttcatactttgttct 359
||||| ||||||| ||||| |||| |||||||||||||||||||||||||||||||| ||
Sbjct: 500 aaaaacaaaaaaataaaaataaaataaaattaattaaaagttatgttcatactttgtcct 559
Query: 360 catataaatattttgattagtaaataaaaactaagtattcaactctattttataaatatg 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 catataaatattttgattagtaaataaaaactaagtattcaactctattttataaatatg 619
Query: 420 attaaattgtagctttgatgcccatctttgtagcaactctactaggtgatacctaccaag 479
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 620 attaaattgtagctttgatgcccatctttgtagcaactccactagatgatacctaccaag 679
Query: 480 agaactgtgaccattctggtcacatggaagcaactgtttctagaacaaagataatgacct 539
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct: 680 agaactgtgaccattctggtcacatggaagccactgtttctagaacaaagataatgacat 739
Query: 540 ta---agtatagaaaacactatcatg 562
|| |||||||||||||||||||||
Sbjct: 740 tattaagtatagaaaacactatcatg 765
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 562
Length of database: 962
Length adjustment: 10
Effective length of query: 552
Effective length of database: 952
Effective search space: 525504
Effective search space used: 525504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
