Query= MSMg01no345_b06.b1 MSMg01no345_b06.b1 CHROMAT_FILE:
MSMg01no345_b06.b1 PHD_FILE: MSMg01no345_b06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:35:27 2005
(490 letters)
>mm_chr3_83062258_83063142
Length = 885
Score = 588 bits (304), Expect = e-172
Identities = 313/318 (98%), Gaps = 5/318 (1%)
Strand = Plus / Minus
Query: 5 gaattcagccttttttgtaatttgagtcgtgggggggggaggggcgtggctgcatatttg 64
|||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct: 313 gaattcagccttttttgtaatttgagtc----ggggggg-ggggcgtggctgcatatttg 259
Query: 65 tctgtaggcatgcatgcgcattagtacatacgtctgcttgggttcacacataaagagcct 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 tctgtaggcatgcatgcgcattagtacatacgtctgcttgggttcacacataaagagcct 199
Query: 125 tgagctccatgctgggtgtcttcaccagtttcttctccatattggtttttgtgatcgagg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 tgagctccatgctgggtgtcttcaccagtttcttctccatattggtttttgtgatcgagg 139
Query: 185 ttttgtcgaacctgaagctcatctggctaaactggctggctactaagttccaggaacctt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138 ttttgtcgaacctgaagctcatctggctaaactggctggctactaagttccaggaacctt 79
Query: 245 gtctccacctctccagtgctgggaatacaggtgcacaccactgtgcccagtttctgcatt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78 gtctccacctctccagtgctgggaatacaggtgcacaccactgtgcccagtttctgcatt 19
Query: 305 agtgggtgctgatgatcc 322
||||||||||||||||||
Sbjct: 18 agtgggtgctgatgatcc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 885
Length adjustment: 10
Effective length of query: 480
Effective length of database: 875
Effective search space: 420000
Effective search space used: 420000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no345_b06.g1 MSMg01no345_b06.g1 CHROMAT_FILE:
MSMg01no345_b06.g1 PHD_FILE: MSMg01no345_b06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:35:27 2005
(428 letters)
>mm_chr3_82891299_82892126
Length = 828
Score = 820 bits (424), Expect = 0.0
Identities = 427/428 (99%), Gaps = 1/428 (0%)
Strand = Plus / Plus
Query: 1 tctttgcacaagactggaaacaagatattcatttngggaagaagcctgaatagcttagag 60
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 202 tctttgcacaagactggaaacaagatattcattt-gggaagaagcctgaatagcttagag 260
Query: 61 gtttggaatgaagtaataattgctcagtgtttgccttaaggaaaatttaataaaaaagaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtttggaatgaagtaataattgctcagtgtttgccttaaggaaaatttaataaaaaagaa 320
Query: 121 aacaaaactttaaatgtctctcatcactcaccttgcctggtcctttcctctcaccttttc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aacaaaactttaaatgtctctcatcactcaccttgcctggtcctttcctctcaccttttc 380
Query: 181 ttgatattcagcatggttgaccttcccagggtctggccactggtccttcttagcatgttc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgatattcagcatggttgaccttcccagggtctggccactggtccttcttagcatgttc 440
Query: 241 ttctctcgcctcctagtttcttcctacatcagctgttatttttcaagaaacaaaatttaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttctctcgcctcctagtttcttcctacatcagctgttatttttcaagaaacaaaatttaa 500
Query: 301 atgtcaagctgataggtagagtttatgcttggaaagccaccaagctggggaaagacccgg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atgtcaagctgataggtagagtttatgcttggaaagccaccaagctggggaaagacccgg 560
Query: 361 ggatccaagctttcatttcttgttcttgggatgcaattaagtctgagccccgcggtgaga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggatccaagctttcatttcttgttcttgggatgcaattaagtctgagccccgcggtgaga 620
Query: 421 aatactca 428
||||||||
Sbjct: 621 aatactca 628
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 428
Length of database: 828
Length adjustment: 9
Effective length of query: 419
Effective length of database: 819
Effective search space: 343161
Effective search space used: 343161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
