NTTTATCGCTAGAAGTTGGGCGCGGGGTACGACTCCTATAGGCAGAGGAT
CCGCGGAATTCAGAAACCACTCTGCTCTTAGCATTAGTGAGTGAAATAGG
CAGAGGAATTTGGCATATTAGTCAAAACTAAATACTAATTTAAATATTAG
GTTAAAACTAAATAAATGTTCTGTAAAGGACAGTGCAATTGATTTTTTTT
AATGACCCGTGCAGTGAGAACGGAGCCTCTAGCCTGCACCTTCTCTGTAA
GGCAGAGATGCTCCCTTGACTGTGACATCTGAAATGGCATGGAAGGATGA
CATGCTGAGGGAGAAGGACGTTCCAGCAGGAAAAAACGATAGACAAGAAT
ACACCATGGAAGGACTGTCGTTTCACCTGACATATAGCCATAAATGCACT
CACGTCACTGGAGATGGCATAATGAAGAGACTGCACCAGCAGACACAGGG
ACAAAAGAAGGTCCCATTGAAATAAGAGAACTGTGCACCTTACCAAGGTG
TCTTTGCTGAGGTGGCACAAGTTAATTGTGCTTGTTAAGTTATGTGATTC
GGATGCAGAGATGTCAGATTTAGGCCAATGAGGCTGTGAGGACGGCTGCT
TATCTCTCCTTCCCATCCCACTCATTCTGAATGTCGGGACAGTCAGACAT
CATCCACAAACTCAGAACAGGATGGAGCAGAGCTCCCTCCCGCCTGCTTT
GTGCAGGCATCAACAAAAGCTTCTCACCTTCTGGAACTCCACTTT

NNNCCCTTTCCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATAC
CGAATGGCAGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAG
AGAAATGCAAATCAAAACAACCCTAAGATTCCACCTCACACCAGTCAGAA
TGTCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGA
GAAAGAGGAACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACC
ACTCTGGAAATCCGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACGAC
CGGAGGATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCA
ACTGGTAAGAAGGACACATGCTCCACTATGTTCATAGCAGCATTATTTAT
AATAGCCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGA
TACAGAAAATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAA
AAGAATGAATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCAT
CATCCTGAGTGAGGTAACACATTCACCAAGGAACTCACACAATATGTACT
CACTGAATAAGGGATATTAGTCCCAAACCCTAGGATCCCCCCTAAATTAT
AATACCTTTTCCTCATNCTCCCNTTTTGGNNNNTTTTAAAAATTAN

Query= MSMg01no345_f02.b1 MSMg01no345_f02.b1 CHROMAT_FILE:
MSMg01no345_f02.b1 PHD_FILE: MSMg01no345_f02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:35:45 2005
         (592 letters)



>mm_chr3_39672952_39673944
          Length = 993

 Score = 1065 bits (551), Expect = 0.0
 Identities = 578/587 (98%), Gaps = 1/587 (0%)
 Strand = Plus / Plus

                                                                       
Query: 7   gaattcagaaaccactctgctcttagcattagtgagtgaaataggcagaggaatttggca 66
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattcagaaaccactctgctcttagcattagtgagtgaaataggcagaggaatttggca 266

                                                                       
Query: 67  tattagtcaaaactaaatactaatttaaatattaggttaaaactaaataaatgttctgta 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 tattagtcaaaactaaatactaatttaaatattaggttaaaactaaataaatgttctgta 326

                                                                       
Query: 127 aaggacagtgcaattgatttttttt-aatgacccgtgcagtgagaacggagcctctagcc 185
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 327 aaggacagtgcaattgatttttttttaatgacccgtgcagtgagaacggagcctctagcc 386

                                                                       
Query: 186 tgcaccttctctgtaaggcagagatgctcccttgactgtgacatctgaaatggcatggaa 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 tgcaccttctctgtaaggcagagatgctcccttgactgtgacatctgaaatggcatggaa 446

                                                                       
Query: 246 ggatgacatgctgagggagaaggacgttccagcaggaaaaaacgatagacaagaatacac 305
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 447 ggatgacatgctgagggagaaggacattccagcaggaaaaaacgatagacaagaatacac 506

                                                                       
Query: 306 catggaaggactgtcgtttcacctgacatatagccataaatgcactcacgtcactggaga 365
           ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 507 catggaaggactgtcatttcacctgacatacagccataaatgcactcacgtcactggaga 566

                                                                       
Query: 366 tggcataatgaagagactgcaccagcagacacagggacaaaagaaggtcccattgaaata 425
           |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||
Sbjct: 567 tggcataatgaagagactgcaatagcagacacagggacaaaagaaggtcccattgaaata 626

                                                                       
Query: 426 agagaactgtgcaccttaccaaggtgtctttgctgaggtggcacaagttaattgtgcttg 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 agagaactgtgcaccttaccaaggtgtctttgctgaggtggcacaagttaattgtgcttg 686

                                                                       
Query: 486 ttaagttatgtgattcggatgcagagatgtcagatttaggccaatgaggctgtgaggacg 545
           |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 687 ttaagttaggtgattcggatgcagagatgtcagatttaggccaatgaggctgtgaggagg 746

                                                          
Query: 546 gctgcttatctctccttcccatcccactcattctgaatgtcgggaca 592
           ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 747 gctgcttatctctccttcccatcccactcattctgaatgtcaggaca 793


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 592
Length of database: 993
Length adjustment: 10
Effective length of query: 582
Effective length of database: 983
Effective search space:   572106
Effective search space used:   572106
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)