Query= MSMg01no345_m23.b1 MSMg01no345_m23.b1 CHROMAT_FILE:
MSMg01no345_m23.b1 PHD_FILE: MSMg01no345_m23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:36:20 2005
(479 letters)
>mm_chr3_54191564_54192441
Length = 878
Score = 876 bits (453), Expect = 0.0
Identities = 471/481 (97%), Gaps = 7/481 (1%)
Strand = Plus / Minus
Query: 6 gaattctccataaggtgcgcaactatttgtcataatatgttagcactatggttagacaca 65
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gaattctccataaggcgtgcaactatttgtcataatatgttagcactatggttagacaca 549
Query: 66 gaaccacagaaacccctttgagattggctaataagaggaaaatgccattgaattagaaca 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 gaaccacagaaacccctttgagattggctaataagaggaaaatgccattgaattagaaca 489
Query: 126 tctaagttaaagcacatcaaataaacattttccttaactaaaagtttatttgataataaa 185
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 tctaagttaaagcatatcaaataaacattttccttaactaaaagtttatttgataataaa 429
Query: 186 ataatggtttataaagtatcatcacaatgaaatagatgatgtaaccttaaatattgaata 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 ataatggtttataaagtatcatcacaatgaaatagatgatgtaaccttaaatattgaata 369
Query: 246 agggtatggtttatagtaagtttattaaattatatttgattgaaaagttgatatcaggtt 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 agggtatggtttatagtaagtttattaaattatatttgattgaaaagttgatatcaggtt 309
Query: 306 caaaaagaatcttctagattcccttttcaaatggacaactgctttcagatatccttacaa 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 caaaaagaatcttctagattcccttttcaaatggacaactgctttcagatatccttacaa 249
Query: 366 aaatttggtagagtctgacaatgaggtgttttttttt-------tatttttaccaattat 418
||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 248 aaatttggtagagtctgacaatgaggtgtttttttttatttttttatttttaccaattat 189
Query: 419 tattactctgctatggcagcatccaaattagaaatgttcaatgaggttcagaaacatctc 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 tattactctgctatggcagcatccaaattagaaatgttcaatgaggttcagaaacatctc 129
Query: 479 a 479
|
Sbjct: 128 a 128
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 878
Length adjustment: 10
Effective length of query: 469
Effective length of database: 868
Effective search space: 407092
Effective search space used: 407092
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no345_m23.g1 MSMg01no345_m23.g1 CHROMAT_FILE:
MSMg01no345_m23.g1 PHD_FILE: MSMg01no345_m23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:36:21 2005
(592 letters)
>mm_chr3_54040910_54041901
Length = 992
Score = 1137 bits (588), Expect = 0.0
Identities = 591/592 (99%)
Strand = Plus / Plus
Query: 1 tcttcttgttcttccttgactaaaatgactttgttagaaatgagtaactcagaaaaatat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcttcttgttcttccttgactaaaatgactttgttagaaatgagtaactcagaaaaatat 260
Query: 61 ctcaacaaatgccaacacatgaattcttttcatggatcacaaatcatatgcacaaaaata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctcaacaaatgccaacacatgaattcttttcatggatcacaaatcatatgcacaaaaata 320
Query: 121 cttttcaaacacatacggttctttatagtaatgatgttatttgggttttgttatgacaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttttcaaacacatacggttctttatagtaatgatgttatttgggttttgttatgacaaa 380
Query: 181 caagattttagactgaaactatttggacatctgatatactttagtattaagggatgaatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caagattttagactgaaactatttggacatctgatatactttagtattaagggatgaatg 440
Query: 241 gtatttgagatgcatatttggatactatgagcttataaaacagatattaactctacatcc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtatttgagatgcatatttggatactatgagcttataaaacagatattaactctacatcc 500
Query: 301 aaggctatgtgttctgtttaagagcattttctgacatctgcatttagtggctattcgtgt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaggctatgtgttctgtttaagagcattttctgacatctgcatttagtggctattcgtgt 560
Query: 361 ttctgggtaaaaacatctaacctttaaaatcactaaactcaggtaactctctgataagaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttctgggtaaaaacatctaacctttaaaatcactaaactcaggtaactctctgataagaa 620
Query: 421 agaaattattattgacttctaaaaatagttttgagtctaattctctgtcttatgaataca 480
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 621 agaaattattattgacttctaaaaatagttttgagtctaattctctgttttatgaataca 680
Query: 481 caagagtataaggaaacaagtcacttagtcccaggtatcaaaccccaagttttgttctct 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 caagagtataaggaaacaagtcacttagtcccaggtatcaaaccccaagttttgttctct 740
Query: 541 acctaaagacaatgtggcaccagtccgttgccttcatgcctatgtatgggtt 592
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 acctaaagacaatgtggcaccagtccgttgccttcatgcctatgtatgggtt 792
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 592
Length of database: 992
Length adjustment: 10
Effective length of query: 582
Effective length of database: 982
Effective search space: 571524
Effective search space used: 571524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
