Query= MSMg01no346_b19.b1 MSMg01no346_b19.b1 CHROMAT_FILE:
MSMg01no346_b19.b1 PHD_FILE: MSMg01no346_b19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:36:43 2005
(556 letters)
>mm_chr3_66501212_66502167
Length = 956
Score = 992 bits (513), Expect = 0.0
Identities = 543/553 (98%)
Strand = Plus / Minus
Query: 4 ggaattctattgacatccctggttctcaggaataccagcaactctgggaatgagattgga 63
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 756 ggaattctatggacatccctggttctcaggaataccagcaactctgggaatgagattgta 697
Query: 64 cttatctgaatgtatacatttcttcttccaaacttcttttcatagataagcatgtaaaac 123
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 696 cttatctgaatgtatacatttcttcttccaaacttcttttcatagttaagcatgtaaaac 637
Query: 124 tgtgtctatatgtagatgataccagagagtgagctctcttcctctaatgacctaattcct 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 tgtgtctatatgtagatgataccagagagtgagctctcttcctctaatgacctaattcct 577
Query: 184 atggcctgccatcttcactctggttagctaagaggtaagacaagttttgtgtctctgagg 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 atggcctgccatcttcactctggttagctaagaggtaagacaagttttgtgtctctgagg 517
Query: 244 gacagcactaaaataaagggtgaagagtatagatagtttcacagaacagtgctggtatcc 303
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct: 516 gacagcactaaaataaagggtgaagagtatagataggttcacagaacagtgctggtgtcc 457
Query: 304 atataaagaagaggccaggccagcacctagactggaaagtttcatgtgtgatttgggaca 363
|||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 atataatgaagagtccaggccagcacctagactggaaagtttcatgtgtgatttgggaca 397
Query: 364 ttatttgcatgatttcctcctagggttgtttagcatgcatgtttctaatggctttgagcg 423
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 ttatttgcgtgatttcctcctagggttgtttagcatgcatgtttctaatggctttgagcg 337
Query: 424 tagtgccaggtgagaagttagagtttttgatagaaagcataagtggtggcaggaagtgac 483
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 336 tagtgccaggtgagaagttagagtttttgatagaaagcttaagtggtggcaggaagtgac 277
Query: 484 aggctcggcatagcagtaactctgattttctggatataggttatatcattccatccttac 543
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 276 aggctcggcatagcagtaactctgattttctggatataggttacatcattccatccttac 217
Query: 544 tatgtagatgcaa 556
|||||||||||||
Sbjct: 216 tatgtagatgcaa 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 956
Length adjustment: 10
Effective length of query: 546
Effective length of database: 946
Effective search space: 516516
Effective search space used: 516516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no346_b19.g1 MSMg01no346_b19.g1 CHROMAT_FILE:
MSMg01no346_b19.g1 PHD_FILE: MSMg01no346_b19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:36:43 2005
(547 letters)
>mm_chr3_66312026_66312971
Length = 946
Score = 961 bits (497), Expect = 0.0
Identities = 533/545 (97%), Gaps = 1/545 (0%)
Strand = Plus / Plus
Query: 3 agattgttagagcattaacacaccatgggacttatgatctaactccctagtccgaaggta 62
|||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||
Sbjct: 203 agattgttagagcattaacagaccatggaactcatgatctaactccctagtccgaaggta 262
Query: 63 catgaaacctaggatgcagatggtgctttccttcagtgtggtcctcctgaaaatcagaag 122
||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 263 catgaaacctaggctgcagatggtgctttccttcagtgtggtcctcctgaaaataagaag 322
Query: 123 gcacatactcatcctgaacattcgtttttctgagtacctctattgtcattcttcattcct 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 gcacatactcatcctgaacattcgtttttctgagtacctctattgtcattcttcattcct 382
Query: 183 aagtctattctccaaacatacattgcccagcaactggcattttacttgtgttttttttag 242
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct: 383 aagtctattctccaaacatacattgcccagcaactggcattttactcatgttttttt-ag 441
Query: 243 cactcaaaaagacctcaaaaagattttattagaaacttcaaccttcaaatactttaaact 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 cactcaaaaagacctcaaaaagattttattagaaacttcaaccttcaaatactttaaact 501
Query: 303 agggcaagatttaactttctctactatgctttatacttccatgagtaaaaggcaaaagtt 362
|||||||||||||||| ||||||||||||| || ||||||||||||||||||||||||||
Sbjct: 502 agggcaagatttaactctctctactatgctatacacttccatgagtaaaaggcaaaagtt 561
Query: 363 aaaaatattgaggaatattaattgttaccttcccacatccacaggtgtgcattgtctgcc 422
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 562 aaaaatattgaggaatattaattgttaccttcccacatccacaggtgtgcattgtctgtc 621
Query: 423 ttactcttcttgcttggcacacagatttaagatttagctttgtgatgcatggcatgttta 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 ttactcttcttgcttggcacacagatttaagatttagctttgtgatgcatggcatgttta 681
Query: 483 gaactacaatgtatgtgttgtctaacaagacagctactagctgcatgtagtcatagcaca 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 gaactacaatgtatgtgttgtctaacaagacagctactagctgcatgtagtcatagcaca 741
Query: 543 ctggt 547
|||||
Sbjct: 742 ctggt 746
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 547
Length of database: 946
Length adjustment: 10
Effective length of query: 537
Effective length of database: 936
Effective search space: 502632
Effective search space used: 502632
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
