Query= MSMg01no346_i17.b1 MSMg01no346_i17.b1 CHROMAT_FILE:
MSMg01no346_i17.b1 PHD_FILE: MSMg01no346_i17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:37:16 2005
(565 letters)
>mm_chr3_9534373_9535336
Length = 964
Score = 948 bits (490), Expect = 0.0
Identities = 539/556 (96%), Gaps = 3/556 (0%)
Strand = Plus / Minus
Query: 11 tttggtatccattttctgaaaatccccacatcccagagaagaagtgggcaaaagtcaaga 70
||||| ||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct: 588 tttggaatcaattttctgaaaatccccacatcccagagaggaagtgggcaacagtcaaga 529
Query: 71 gcaggcaactcatcagagaaatagagaaatgtgggtaaagcctctgcaaattaccagtgc 130
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 gcaggcaactcatcagagaaatagagaaatgtgggtaaagcctctgcaaattaccagtgc 469
Query: 131 tgatttgctcccgagctcaggcttcagctgtgggaggcttaaagagtgtaacacgtctaa 190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 tgatttgctcccgagctcaggcttcagctgtgggaggcttaaagagtgtaacacgtctaa 409
Query: 191 ggatacatcatagtgatcactgactctagcattctgccttatagactgagctccaagtag 250
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 408 ggatacatcatagtgatcactgactctagcactctgccttatagactgagctccaagtag 349
Query: 251 gtgtaggtg-aaaacgttgtacgaaagacttgacaattatgttttattagtaagagagaa 309
||||||||| |||| ||||||| |||||||||||||||||| |||||| | ||||||||
Sbjct: 348 gtgtaggtgaaaaatgttgtactaaagacttgacaattatg--ttattaatgagagagaa 291
Query: 310 acattgtaataatgggctacttagaaaattgtgacatcatgacccttccaaaggaccgtc 369
||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct: 290 acattgtaataatgggctacttagaaaattgtgacatgatgacccttccaaaggactgtc 231
Query: 370 atgtacccattaatgatgatgatgaccctggagatagaaaatctaggaaagagatcagga 429
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 230 atgcacccattaatgatgatgatgaccctggagatagaaaatctaggaaagagatcagga 171
Query: 430 gtcatagacgcaagcatagccaacagaatacaagagatagaagagagaatttcagatgca 489
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 170 gtcatagacgcaagcatagccaacagaatacaagagatagaagagagaatttcagatgca 111
Query: 490 gaagataccatataaaacattgacacaacagtcaaagaaaatgcaaaaggtaaaaagctt 549
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110 gaagataccatagaaaacattgacacaacagtcaaagaaaatgcaaaaggtaaaaagctt 51
Query: 550 ctagccccaaacatcc 565
||||||| ||||||||
Sbjct: 50 ctagcccaaaacatcc 35
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 964
Length adjustment: 10
Effective length of query: 555
Effective length of database: 954
Effective search space: 529470
Effective search space used: 529470
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no346_i17.g1 MSMg01no346_i17.g1 CHROMAT_FILE:
MSMg01no346_i17.g1 PHD_FILE: MSMg01no346_i17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:37:16 2005
(581 letters)
>mm_chr3_9356155_9357135
Length = 981
Score = 1046 bits (541), Expect = 0.0
Identities = 571/581 (98%)
Strand = Plus / Plus
Query: 1 tagttaaatcattgccctctagttatcaaagagggaactgaaccttactctgggtcatta 60
||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 201 tagttaaatcattatcctctagttatcgaagagggaactgaaccttactctgggtcatta 260
Query: 61 gttgccatagaaatggaacttagggctagagagactgcgcagtgctctggagcactggct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttgccatagaaatggaacttagggctagagagactgcgcagtgctctggagcactggct 320
Query: 121 gttcttccagaggacctggcttgcattcctagcacccacatggcagctctcagctgtctg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gttcttccagaggacctggcttgcattcctagcacccacatggcagctctcagctgtctg 380
Query: 181 tctcagctgtctgtctcctgccctcttctggcctcttggctaccaggcacatctgtggtt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctcagctgtctgtctcctgccctcttctggcctcttggctaccaggcacatctgtggtt 440
Query: 241 cagcgacatacatgcatgcaaaacatccatacacataacataaggtaaaaataaaaatta 300
||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 441 cagagacatacatgcatgcaaaacatccatacacataacataaagtaaaaataaaaatta 500
Query: 301 atgcttttttaatacgagagaaatgggactcaaatacaggacctgacgctccgtggccat 360
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 501 atgcttttttaatacgagagaaatgggactcaaatacaggacctgacgctctgtggccat 560
Query: 361 tggccacctccttaatccatgaggcattgtcacataattaaaagatgccattgtatgcaa 420
| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 561 tagccacctccttaatccatgaggcattgtcacataattaaaggatgccattgtatgcaa 620
Query: 421 tatttaaagcttttacttcaaaggaaaagttgtcacctatgacatagagaaggttaattc 480
||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 621 tatttaaagctttaacttcaaaggaaaagctgtcacctatgacatagagaaggttaattc 680
Query: 481 ctgagcagctgaggctccatgagccactctgcagatgaggattcatcccacatctagctg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctgagcagctgaggctccatgagccactctgcagatgaggattcatcccacatctagctg 740
Query: 541 ctaaaagcagcaagcaaacaagcaggtcaccaaagctgaca 581
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ctaaaagcagcaagcaaacaagcaggtcaccaaagctgaca 781
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 581
Length of database: 981
Length adjustment: 10
Effective length of query: 571
Effective length of database: 971
Effective search space: 554441
Effective search space used: 554441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
