XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTGAA
TGTGTGTTGCAAATATAAGTCTCATATGTTTGCTCAAACATAAGAAAAAA
TGAGTTACTGATGAATGTCATCAGTTTATATAGCCATTTTAAAACAATTT
AAAAATGTCCCATAATTATTTAACATTTCTGGAATTTAGTTAGAGCATCA
ACTTAAAGGTCACACTTAACAGTAATTCAATTAAGTTTGTGTTCATGAGC
CTATTATCAGGAAATATTACAAGCATATATTATCGGATCTTTATAATATG
TTTTTGTGAGATATGGTGCCGCTTTTTTATGGTTGTAAATACTTGAATTT
ATTAAAGAATATATCACTTACTTATTGGCCCTCAATAGTATGTTCAGTAA
TCTGAGGTCATATCTGATATTTATTTTACAAATAAAAAGTAAAGTTTAGA
TTATTTATTAATTTACTGATATTTTCCCATCTCCTATATATATCCCAACA
AAATTTTAAGCAGTATAAAATTACAATTTGATTACCTTTTATTTTCCTTC
TAGTGAATGACTATGACAAAACCCAAAATATCTTTACAAGAAATAGCATT
TTGTAGTCCAGATAAAGAAAACAAGTTATTTTCAATAACTCGTGGACAGT
CATAACTAAGTACAATTACATAAATTACAATTACATAAATTCTCTGTAAA
CTTCCCACATATTACTTGTACTTTCTTATACN

GAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCATCTCTTTACAGTTTTCAGAAAAAGCATGGAAA
TTAGTAACTCAACAATAATGATATTGACAGTCTTTAAAAAATGTTCCCCA
ACGCCCTCGGATACTTAGAGGATAGGAAGGTTTTCTGTGGTTAGAGCAGT
GCCTCAAACTTGCTTTCAATATGCAAAGTTGATGGAGGAGATCCGAGGGT
ACTTCTAAAGCCTGCACCTGAAGTAAAAAAGACTGTGTAGGGTGGAGCGG
GATGAATCCATAAACCAAAGTCTCTTTCTAAACAACCATCTTCTCGAAGT
CCTGAGTGTGAAAGACCAGTGAAATACACAGTGTCCTTTGCCATCAGAGC
CCCTTGATTCCAAGTGGACCAGGCTGAGCTGATTGGATGCTGAGGGTATC
AGAGCTCTGTGAACTTGCTCTCAGAAACTGCACCTGGGGGTGTGCCTGGT
CTGGAGTAGGGAAAGTCTGGCAAGACTTTGATTTGCCGCTGGTTTTTCTT
GACAAATAAACAAACTTGGGCCTAGAGAGCCTTGATCCTCATTCACAGTT
GACTTGTCTTTTAAATCTCTTCCACTCTCTGGGTCTCATTTACTTTTCTA
GGATATTACCACCAAGAAGGCCCCATATTGGACAATTTTCTCCTTACATG
GAATTTACCGTATTGTTTGCCCTATGACA

Query= MSMg01no346_p02.b1 MSMg01no346_p02.b1 CHROMAT_FILE:
MSMg01no346_p02.b1 PHD_FILE: MSMg01no346_p02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:37:45 2005
         (652 letters)



>mm_chr3_111694291_111695342
          Length = 1052

 Score = 1230 bits (636), Expect = 0.0
 Identities = 645/648 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctgaatgtgtgttgcaaatataagtctcatatgtttgctcaaacataagaaaaaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgaatgtgtgttgcaaatataagtctcatatgtttgctcaaacataagaaaaaa 264

                                                                       
Query: 65  tgagttactgatgaatgtcatcagtttatatagccattttaaaacaatttaaaaatgtcc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgagttactgatgaatgtcatcagtttatatagccattttaaaacaatttaaaaatgtcc 324

                                                                       
Query: 125 cataattatttaacatttctggaatttagttagagcatcaacttaaaggtcacacttaac 184
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cataattatttaacatttatggaatttagttagagcatcaacttaaaggtcacacttaac 384

                                                                       
Query: 185 agtaattcaattaagtttgtgttcatgagcctattatcaggaaatattacaagcatatat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agtaattcaattaagtttgtgttcatgagcctattatcaggaaatattacaagcatatat 444

                                                                       
Query: 245 tatcggatctttataatatgtttttgtgagatatggtgccgcttttttatggttgtaaat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tatcggatctttataatatgtttttgtgagatatggtgccgcttttttatggttgtaaat 504

                                                                       
Query: 305 acttgaatttattaaagaatatatcacttacttattggccctcaatagtatgttcagtaa 364
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 505 acttgaatttattaaagaatatatcacttacttataggccctcaatagtatgttcagtaa 564

                                                                       
Query: 365 tctgaggtcatatctgatatttattttacaaataaaaagtaaagtttagattatttatta 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tctgaggtcatatctgatatttattttacaaataaaaagtaaagtttagattatttatta 624

                                                                       
Query: 425 atttactgatattttcccatctcctatatatatcccaacaaaattttaagcagtataaaa 484
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 atttactggtattttcccatctcctatatatatcccaacaaaattttaagcagtataaaa 684

                                                                       
Query: 485 ttacaatttgattaccttttattttccttctagtgaatgactatgacaaaacccaaaata 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ttacaatttgattaccttttattttccttctagtgaatgactatgacaaaacccaaaata 744

                                                                       
Query: 545 tctttacaagaaatagcattttgtagtccagataaagaaaacaagttattttcaataact 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tctttacaagaaatagcattttgtagtccagataaagaaaacaagttattttcaataact 804

                                                           
Query: 605 cgtggacagtcataactaagtacaattacataaattacaattacataa 652
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 cgtggacagtcataactaagtacaattacataaattacaattacataa 852


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 652
Length of database: 1052
Length adjustment: 10
Effective length of query: 642
Effective length of database: 1042
Effective search space:   668964
Effective search space used:   668964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no346_p02.g1 MSMg01no346_p02.g1 CHROMAT_FILE:
MSMg01no346_p02.g1 PHD_FILE: MSMg01no346_p02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:37:45 2005
         (505 letters)



>mm_chr3_111881109_111882013
          Length = 905

 Score =  922 bits (477), Expect = 0.0
 Identities = 498/505 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   catctctttacagttttcagaaaaagcatggaaattagtaactcaacaataatgatattg 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 705 catctctttacagttttcagaaaaagcatggaaattagtaactcaacactaatgatattg 646

                                                                       
Query: 61  acagtctttaaaaaatgttccccaacgccctcggatacttagaggataggaaggttttct 120
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 645 acagtctttaaaaaatgttccccaacgccctcagatacttagaggataggaaggttttct 586

                                                                       
Query: 121 gtggttagagcagtgcctcaaacttgctttcaatatgcaaagttgatggaggagatccga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 gtggttagagcagtgcctcaaacttgctttcaatatgcaaagttgatggaggagatccga 526

                                                                       
Query: 181 gggtacttctaaagcctgcacctgaagtaaaaaagactgtgtagggtggagcgggatgaa 240
           ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct: 525 gggtacttctaaagcctgcacctgaagtaaaaaagactgtgcagggtggagcaggatgaa 466

                                                                       
Query: 241 tccataaaccaaagtctctttctaaacaaccatcttctcgaagtcctgagtgtgaaagac 300
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 tccataaaccacagtctctttctaaacaaccatcttctcgaagtcctgagtgtgaaagac 406

                                                                       
Query: 301 cagtgaaatacacagtgtcctttgccatcagagccccttgattccaagtggaccaggctg 360
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 405 cagtgaaatacacagtgtcctttgccatcagagcccctcgattccaagtggaccaggctg 346

                                                                       
Query: 361 agctgattggatgctgagggtatcagagctctgtgaacttgctctcagaaactgcacctg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 agctgattggatgctgagggtatcagagctctgtgaacttgctctcagaaactgcacctg 286

                                                                       
Query: 421 ggggtgtgcctggtctggagtagggaaagtctggcaagactttgatttgccgctggtttt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 ggggtgtgcctggtctggagtagggaaagtctggcaagactttgatttgccgctggtttt 226

                                    
Query: 481 tcttgacaaataaacaaacttgggc 505
           ||||| |||||||||||||||||||
Sbjct: 225 tcttggcaaataaacaaacttgggc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 505
Length of database: 905
Length adjustment: 10
Effective length of query: 495
Effective length of database: 895
Effective search space:   443025
Effective search space used:   443025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)