Query= MSMg01no347_b03.b1 MSMg01no347_b03.b1 CHROMAT_FILE:
MSMg01no347_b03.b1 PHD_FILE: MSMg01no347_b03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:37:56 2005
(311 letters)
>mm_chr3_5808376_5809086
Length = 711
Score = 572 bits (296), Expect = e-168
Identities = 305/308 (99%)
Strand = Plus / Minus
Query: 4 ggaattcagtgacttcggtactgatcaattccaggttggcataaacacaaaccataacta 63
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 ggaattcagtgactttggtactgatcaattccaggttggcataaacacaaaccataacta 374
Query: 64 ctctatgcataaataaacctggaaatttatatctttttcagtcatagcttttaatctctg 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 ctctatgcataaataaacctggaaatttatatctttttcagtcatagcttttaatctctg 314
Query: 124 cctatgcccctgccagagaaatagcaagtttgggtaaaaattcagcctactcaaccagga 183
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 313 cctatgcccctgccagagaaatagcaagtttgggtaaaaattcagcctactcaatcagga 254
Query: 184 ccactggctaaggaatcagtttcttttagtcagtgaaactggatgttgattttgtttgtt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 ccactggctaaggaatcagtttcttttagtcagtgaaactggatgttgattttgtttgtt 194
Query: 244 tgtttgtttgtttgtttgtttttacatttatgaacacaagatatacagttccctgccaag 303
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 193 tgtttgtttgtttgtttgtttttacatttaggaacacaagatatacagttccctgccaag 134
Query: 304 ttagtata 311
||||||||
Sbjct: 133 ttagtata 126
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 711
Length adjustment: 9
Effective length of query: 302
Effective length of database: 702
Effective search space: 212004
Effective search space used: 212004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no347_b03.g1 MSMg01no347_b03.g1 CHROMAT_FILE:
MSMg01no347_b03.g1 PHD_FILE: MSMg01no347_b03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:37:56 2005
(525 letters)
>mm_chr3_5622478_5623402
Length = 925
Score = 969 bits (501), Expect = 0.0
Identities = 519/525 (98%)
Strand = Plus / Plus
Query: 1 cagtcctaggtgcttcattattaactttcctgagtttcgattgcagcatctttaatgagc 60
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 201 cagtcctaggtgcttcattattaactttcctgagtttcaattgcagcatctttaatgagc 260
Query: 61 tgggaacaagtgagtgtttttcaatctttccttagcaacatgaacttctttcttcaagtg 120
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 261 tgggaacaagtgagtgtttttcaatctttccttggcaacatgaacttctttcttcaagtg 320
Query: 121 aaaattcatgtggaaaaataataccttttatatgcctataaaaaacagagttgaaatgtc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaaattcatgtggaaaaataataccttttatatgcctataaaaaacagagttgaaatgtc 380
Query: 181 tgtactacaatcaagcactataggaggcaaattgaaagtcactgaaccaactggtgcctg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtactacaatcaagcactataggaggcaaattgaaagtcactgaaccaactggtgcctg 440
Query: 241 tcaatgctaacatttaggaatccccaaagtagtcatgttttattaatcataatagcagca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcaatgctaacatttaggaatccccaaagtagtcatgttttattaatcataatagcagca 500
Query: 301 tttagacatctaaactcgaaactttattttgcttcatttacttagctaacagcattaagt 360
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttagacatctaaactcaaaactttattttgcttcatttacttagctaacagcattaagt 560
Query: 361 gaaaataaagccaaattcattaatccatccaacagacaaactaccagtaaatactggagt 420
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 561 gaaaataaagccaaattcattaatccatccaacaaacaaactaccagtaaatactggagt 620
Query: 421 cagaagtcaaacccaggacaatttgcctagaacatttgagttgatgctttgaagatttac 480
||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct: 621 cagaagtcaaacccaggacaatttgcctagaacttttaagttgatgctttgaagatttac 680
Query: 481 tgtgttcaaggaactgctttcctaatgcaatgataaccatatggc 525
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgtgttcaaggaactgctttcctaatgcaatgataaccatatggc 725
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 525
Length of database: 925
Length adjustment: 10
Effective length of query: 515
Effective length of database: 915
Effective search space: 471225
Effective search space used: 471225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
