BAC Information

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BAC

Clone NameMSMg01-347C11
Chromosome3 (Build37)
Map Location 34,657,454 - 34,657,772
singlet/doubletsinglet
Overlap genenone
Upstream geneTtc14, Ccdc39, LOC100040232, LOC100041072, Fxr1h, Dnajc19, LOC435727, EG665636, EG622074, Sox2, LOC100041108
Downstream geneLOC665655, Ube2l3-ps1, LOC625963, Atp11b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-347C11.T7 (MSMg01no347_c11.b1)MSMg01-347C11.TJ (MSMg01no347_c11.g1)
ACCAG459564AG459565
length759746
length of high quality
(start - end)		555 (73 - 627)543 (78 - 620)
definitionCHROMAT_FILE: MSMg01no347_c11.b1 PHD_FILE: MSMg01no347_c11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:38:02 2005CHROMAT_FILE: MSMg01no347_c11.g1 PHD_FILE: MSMg01no347_c11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:38:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNTTCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCATCACTACCAACAAGGTGGTGACAAGGACCCCAGCAAGTTG
TCCTCAGATCTCCTCAAGTGTCATGGCTCACACATGTCCATCCACCCACA
CACATACACCACAAGTCATTTTAAAGGATTAAAAACTTGAATACAGCCGG
GCGTGGTGGCACACACTTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGT
GGATTTCTGAGTTCCAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACA
GCCAAGGCTACACAGAGAAACCCTGTCTTGAAAAACTTTAAAAAAAAAAA
AAATCCTTGAATACATATGTGTATGCATTTTAAAGTCTTTATAAAATGTC
TAAGAGATGGACATGGTGGTGCACATTTTGAATCCCAGCACTTAGGAGGC
AGAAGCAGACAGATTTTTGTGAGTTTGGAGCCAGCTGGGTTTACTGGTTT
ACAAAGTGAGTTCTAGAACAGACTGTTACAGAGACACCAGGTCTTGAAAA
AACTTCCCTCCACTAAAAAAAAAAAAAAAAAAAAATCACCTTTAGCCAGG
TGGCCATGGCACAGGCCTTTGATCCCAGCACTTGTAGGGCAGAGGCAGGC
GGATCTCTATGAGTTTCAGGCCAACCTGGTCTATATAACAAAGTCTAGGA
CAGCTTACAAACCCTGTCTTAAGAAATACTACAAAGAAAAAACCCTATTT
TTAATCTGC

NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAACTCCCAAGCACCCACATAAAG
GTCCAGCATGTCTATGAGTGCCAGTGACCACAGAGCCAGGGTCTGGAGCC
GGGCAGATCCTAGGAGCCCACTGCCACCTGACCTAGGCATTTTGGAGTTT
GAGATTCTCTGGGGACCCTGTCTCATTAAATAGGACAGGAGGGGACAGGA
GGAGACACCCAGTGTACTCCAGCCTCAACATGCATAAGCACGATGAATGC
ATTCACAACACATATATACACACATACACACATATCATACACACAGAAAT
TAATTACTACATTTTAAAAATAAGGATGACCCCAATACAACAAAGTTCAG
AGCATCAAAAAGGTCTTGAAACAAAGTCTTTTATTTATTTATTTATTTAT
TTATTTATTTATTTATTTATTTATTTTTGAGATAGTATCTTTTTATGTAG
ACCACTATATCAACCAAGCTGACCTTGAACTCACGGAGATCCACCTGCCT
ATGCTAGGATTAAAAGTGTGTGCCATTGTACCCAGATTGAAAAATAGTCT
TTATGAAAAGAGATTATCAAGATTATCCTGCGATGGGGCTGGAGAGATGG
CTCAGTGGTTAAGAGCACGGATTGCTCTTCCTGAGGTCCTGAGTTCACAT
CCCAGCAACCACTTGGTGACTCACAACCATCTTGTATGAGACTTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no347_c11.b1 MSMg01no347_c11.b1 CHROMAT_FILE:
MSMg01no347_c11.b1 PHD_FILE: MSMg01no347_c11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:38:02 2005
         (555 letters)



>mm_chr3_34657454_34658405
          Length = 952

 Score =  559 bits (289), Expect = e-163
 Identities = 314/325 (96%), Gaps = 6/325 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggtggtgacaaggaccccagcaagttgtcctcagatctcctcaagtgtcatggctcaca 60
           |||||||||||||||||||||||||||||||||||||   |||||||||||||| |||||
Sbjct: 319 aggtggtgacaaggaccccagcaagttgtcctcagat---ctcaagtgtcatggttcaca 263

                                                                       
Query: 61  catgtccatccacccacacacatacaccacaagtcattttaaaggattaaaaacttgaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 catgtccatccacccacacacatacaccacaagtcattttaaaggattaaaaacttgaat 203

                                                                       
Query: 121 acagccgggcgtggtggcacacacttttaatcccagcacttgggaggcagaggcaggtgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 202 acagccgggcgtggtggcacacacttttaatcccagcacttgggaggcagaggcaggagg 143

                                                                       
Query: 181 atttctgagttccaggccagcctggtctacagagtgagttccaggacagccaaggctaca 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 142 atttctgagttccaggccagcctggtctacagagtgagttccaggacagccagggctaca 83

                                                                       
Query: 241 cagagaaaccctgtcttgaaaaactttaaaaaaaaaaaaaatccttgaatacatatgtgt 300
           |||||||||||||| |||||||||||| ||||||||||   |||||||||||||||||||
Sbjct: 82  cagagaaaccctgttttgaaaaacttttaaaaaaaaaa---tccttgaatacatatgtgt 26

                                    
Query: 301 atgcattttaaagtctttataaaat 325
           |||||||||||||||||||||||||
Sbjct: 25  atgcattttaaagtctttataaaat 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 555
Length of database: 952
Length adjustment: 10
Effective length of query: 545
Effective length of database: 942
Effective search space:   513390
Effective search space used:   513390
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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