BAC Information

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BAC

Clone NameMSMg01-347I22
Chromosome3 (Build37)
Map Location 30,975,644 - 30,976,039
singlet/doubletsinglet
Overlap genenone
Upstream geneMds1, LOC100040727, LOC100040734, LOC100040749, Arpm1, Mynn, Lrrc34, 4930558O21Rik, E230002P03Rik, Samd7, Tloc1, Gpr160, Phc3, LOC100040809, Prkci
Downstream geneSkil, Cldn11, Slc7a14, LOC625125, Kcnmb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-347I22.T7 (MSMg01no347_i22.b1)MSMg01-347I22.TJ (MSMg01no347_i22.g1)
ACCAG459870AG459871
length880763
length of high quality
(start - end)
98 (73 - 170)439 (78 - 516)
definitionCHROMAT_FILE: MSMg01no347_i22.b1 PHD_FILE: MSMg01no347_i22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:38:34 2005CHROMAT_FILE: MSMg01no347_i22.g1 PHD_FILE: MSMg01no347_i22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:38:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAACCAAAATCTGCGGCGCTAAACGACTCACATATCCAAAAATCCGCGGA
ATTCTCTCTCCTGCTGCCAAGTGTAAACAAGCATATCCCAGAGAGAAAGC
CTGCTCTGTCCCTTTTCACGGGCTCCCACAGTCACAACCCAGTGGTGGGT
TGTTTGTTTGGTTTGTTGTTTGGCTGAAAACTACCATATTACCCAAAACC
CCCAATACCCCCCCAAAACCAAATTATCCCTACATATAATATATTACCAA
ACAATTTTTTTTTTAACATAACCACTATATTCCCTCCCTCCCCATATTAA
TAACTCTTCCCTAATTAAAACCAATTTTTCTTATTTCNAAAACAAAAACC
ACACTCTACAAACTACCACATTCTCCCTATCCATTACTCTTTCACTTTAT
AACACTCTATAATATACTTTATTTTTTTCCCCCCCCCCCCCCCATTTATA
CCCCAAACCATAAACCCACCCCTCTATTTTCTCCCCTATCCCCCCCTCAC
TTATACATATTCAAAATCCATTTTCCCTCCCCTCTCCCTATCACTAATTC
CACTTATAATACCCAATAAAAACTAACAAACAAATATTCATCTCTCCCCC
CCCTTCTATTCCTATATAATTTCTTTATCACATATATTACCCCCCTCCAT
ACACAATAATATAACCTATTCTTATCCCCCCCCCCCCTATCCCCTTATTT
ATTCTCCTATCCCTTTCATCCCTACTCCTTTTTATATTTTTCCCCCCCCC
TATCTCCCTTATATTACCTCCACCCTTCCTCCACTATAATTATTCACCCA
TCCATACTATTTCTCCCTCCTCATTTACCCCCCTTTTCCCCCACCATCTT
TATCCCTTTCTATTTTTAATTTACTCACTC
NCCCGATGATATTGCGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTGTCTGTGCCCCTAAATTTAAAT
TTCGAAGAGGCTCTGATTGGACCGGAATGTAATTTGCTATGTCAGGTCAT
TGTTATGGCAGAGGCTGGTAGGCTGTGGGTCACCTCTTGCCTAACCCATT
GGAATAATAGGGTGTAGACATGGAAAATGGGGTAGTCTCTGTCTCAGGAC
GTGGTTCAGCAATGGCGCATTTGCTTAACTTGTGCAAAGCCCTGGCTTTG
ACCCTCAGCACGACAAGGAATCATTTTTAATTTGTTTTAAGGAGTTTCTC
CTGAGGGAACACAGGTGAGCAAGGCACTGAACACATGCAGTTACTGTGAA
GGAATTAAAAAGAATTCCCCAAGTTTAAACCTCCAGGCTCCCTTGCGAGG
CTAGAGTCTGTTCTCAGCCCATCTAAGTCTCGGCCTGATCACCTTGAGTA
TCTGAAGACCCTGCTTATGAAGGAGGAAAAGGTGTGTAAATAATTTAAGT
TATATTTATGGAATTCTTCAGGTGCTATGGTATAAAAATTTGCCCGAGTA
AAGACTATTTCTTCTCCATTAACATGCCCTTCCTTTGGCTTGGCCTGCTT
TCTTTACCGGCCTACTCTCTAAAATGGAATTGGCCTTTGAAAATGCTCCA
CCTTATGGCGGTCATCCCTTTTTTGCAGCCCATCCTATTTTACAAAACTT
TCTATTCCTGAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no347_i22.g1 MSMg01no347_i22.g1 CHROMAT_FILE:
MSMg01no347_i22.g1 PHD_FILE: MSMg01no347_i22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:38:34 2005
         (439 letters)



>mm_chr3_30975201_30976039
          Length = 839

 Score =  743 bits (384), Expect = 0.0
 Identities = 393/396 (99%)
 Strand = Plus / Minus

                                                                       
Query: 44  accggaatgtaatttgctatgtcaggtcattgttatggcagaggctggtaggctgtgggt 103
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 839 accggaatgtaatttgctatgtcaggtcattgttatggcagaggctggtaggctgtgggt 780

                                                                       
Query: 104 cacctcttgcctaacccattggaataatagggtgtagacatggaaaatggggtagtctct 163
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 779 cacctcttgcctaacccattggaataatagggtgtagacatggaaaatggggtagtctct 720

                                                                       
Query: 164 gtctcaggacgtggttcagcaatggcgcatttgcttaacttgtgcaaagccctggctttg 223
           | ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 719 ggctcaggacgtggttcagcaatggtgcatttgcttaacttgtgcaaagccctggctttg 660

                                                                       
Query: 224 accctcagcacgacaaggaatcatttttaatttgttttaaggagtttctcctgagggaac 283
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 659 accctcagcacgacaaggaatcatttttaatttgttttaaggaatttctcctgagggaac 600

                                                                       
Query: 284 acaggtgagcaaggcactgaacacatgcagttactgtgaaggaattaaaaagaattcccc 343
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 acaggtgagcaaggcactgaacacatgcagttactgtgaaggaattaaaaagaattcccc 540

                                                                       
Query: 344 aagtttaaacctccaggctcccttgcgaggctagagtctgttctcagcccatctaagtct 403
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 aagtttaaacctccaggctcccttgcgaggctagagtctgttctcagcccatctaagtct 480

                                               
Query: 404 cggcctgatcaccttgagtatctgaagaccctgctt 439
           ||||||||||||||||||||||||||||||||||||
Sbjct: 479 cggcctgatcaccttgagtatctgaagaccctgctt 444


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 439
Length of database: 839
Length adjustment: 9
Effective length of query: 430
Effective length of database: 830
Effective search space:   356900
Effective search space used:   356900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)