Query= MSMg01no347_m04.b1 MSMg01no347_m04.b1 CHROMAT_FILE:
MSMg01no347_m04.b1 PHD_FILE: MSMg01no347_m04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:38:50 2005
(509 letters)
>mm_chr3_9760934_9761841
Length = 908
Score = 907 bits (469), Expect = 0.0
Identities = 500/511 (97%), Gaps = 4/511 (0%)
Strand = Plus / Plus
Query: 1 gctatatagtgaaacctagtctc--aaaaaaaaaaaaaacacacacacacaaaaaataaa 58
||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct: 200 gctatatagtgaaacctagtctcaaaaaaaaaaaaaaaaaacacacacacaaaaaataaa 259
Query: 59 aaaattaaaaaaaagtgctgtagagaatttgattcaaaaagtgatccaaagacatggctg 118
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 aaaatt-taaaaaagtgctgtagagaatttgattcaaaaagtgatccaaagacatggctg 318
Query: 119 ctgacggctgcgagcaatatgctcttacaggacatttaggaagtccattttggcctcaga 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 ctgacggctgcgagcaatatgctcttacaggacatttaggaagtccattttggcctcaga 378
Query: 179 caaagagtattactccatttctctgatacatatgtattactttcaaatacactgggaata 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 caaagagtattactccatttctctgatacatatgtattactttcaaatacactgggaata 438
Query: 239 tgacaacttatttaaaaatcctcattccctataacctattaggacaacatgctttggagc 298
||||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct: 439 tgacaac-tatttaaaaatcctcgttccctataccctattaggacaacatgctttggagc 497
Query: 299 tgccctcatctgcccagtctcgtgtggaaatggagtctcggttcccaccacttctctttc 358
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 498 tgccctcatctgcccagtctcgtgtggaaatggagtctcggttcctaccacttctctttc 557
Query: 359 cactaactattcttcactgtccagtggacagactgtccactaatcgtaataatgtcagag 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 558 cactaactattcttcactgtccagtggacagactgtccactaatcgtaataatgtgagag 617
Query: 419 ggacatacagatactgaaatctagttgattctagtcaccgaaaaagagaagtaaatagta 478
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 618 ggacatacagatactgaaatctagttgattctagtcaccgaaaaagggaagtaaatagta 677
Query: 479 tgttacttttacctctataaactgttaatgg 509
|||||||||||||||||||||||||||||||
Sbjct: 678 tgttacttttacctctataaactgttaatgg 708
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 908
Length adjustment: 10
Effective length of query: 499
Effective length of database: 898
Effective search space: 448102
Effective search space used: 448102
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no347_m04.g1 MSMg01no347_m04.g1 CHROMAT_FILE:
MSMg01no347_m04.g1 PHD_FILE: MSMg01no347_m04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:38:50 2005
(456 letters)
>mm_chr3_9957104_9957959
Length = 856
Score = 820 bits (424), Expect = 0.0
Identities = 448/456 (98%)
Strand = Plus / Minus
Query: 1 tcccttttcccttctttgcagaccaggactgcagcttatgggatggcactgcccacattt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 tcccttttcccttctttgcagaccaggactgcagcttatgggatggcactgcccacattt 737
Query: 61 gactattctttcctcagttaaaactccctggaaatgtctccagaaacatccaggatgtgt 120
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 736 gactattctttcctcagttaaaactccctggaaatgtccccagaaacatccaggatgtgt 677
Query: 121 gtctcctgggtgactctaaacacataaaactggcaggactatcttagatgtgtagggatt 180
||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 676 gtctcctggttgactctaaacacataaaactggcaggactatcttagatatgtagggatt 617
Query: 181 attttccttctgtctggtaactaacactgtgaccaaggcaagtttccaaatcagaagcct 240
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 616 attttccttctgtctggtaactaacactgtgaccaaggcaagtttccaaaccagaagcct 557
Query: 241 catggtcctatttttatgtaaggaagcaagtccactgtctcgttgtggttccaaaatccc 300
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 catgttcctatttttatgtaaggaagcaagtccactgtctcgttgtggttccaaaatccc 497
Query: 301 cagataaatgctcaggtaacccatctgaatgctcagctcctgactgcgaatggctctgtg 360
||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 496 cagataaatgctccggtaactcatctgaatgctcagctcctgactgcgaatggctctgtg 437
Query: 361 ccgttcctttggcagtaaagaaaaagataaagcaaatgcgctaaatgcctcttgttggga 420
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 ccgttcctttggtagtaaagaaaaagataaagcaaatgcgctaaatgcctcttgttggga 377
Query: 421 ttctttataaaatacgcatgtgttaggtggcttgtg 456
||||||||||||||||||||||||||||||||||||
Sbjct: 376 ttctttataaaatacgcatgtgttaggtggcttgtg 341
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 456
Length of database: 856
Length adjustment: 10
Effective length of query: 446
Effective length of database: 846
Effective search space: 377316
Effective search space used: 377316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
