BAC Information

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BAC

Clone NameMSMg01-347M20
Chromosome3 (Build37)
Map Location 35,746,305 - 35,746,626
singlet/doubletsinglet
Overlap geneAtp11b
Upstream geneLOC665655, Ube2l3-ps1, LOC625963
Downstream geneLOC665667, Dcun1d1, Mccc1, BC050811, Acad9, D3Ertd254e, Gpr103, Anxa5, 1810062G17Rik, LOC665709, Exosc9, Ccna2, Bbs7, Trpc3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-347M20.T7 (MSMg01no347_m20.b1)MSMg01-347M20.TJ (MSMg01no347_m20.g1)
ACCAG460056AG460057
length798781
length of high quality
(start - end)
449 (43 - 491)322 (81 - 402)
definitionCHROMAT_FILE: MSMg01no347_m20.b1 PHD_FILE: MSMg01no347_m20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:38:53 2005CHROMAT_FILE: MSMg01no347_m20.g1 PHD_FILE: MSMg01no347_m20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:38:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTATAATTTGCNGGCGCTAAACGACTCCTATATTCAGAGGATCCGCGGA
ATTCTCAACTGATGAATACCGAATGGCTGAGAAGCACCTGAAAAAATGTT
CAACATCCTTAATCATCAGGGAAATACAAATCAAAACAACCTTGAGATTC
CACCTCATACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCTG
ATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGCTGGTGGG
ATTGCAAGCTAGTACAACCACTCTGGAAATCAGTCTGGCAGTTCCTCAGA
AAATTGGACATAGTACTACCAGAAGATCCAGCAATACCTCTCCCTGGCAT
ATACCCAGAAGATGTTCCAACTGGTAATAAGGACACATGCTCCACTATAT
TCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGT
CTCTCAACAGAGGAATGGATACAGAAAATGTGGTACATTTACACATGTAG
TACTACTCTGCTATTAAAAACAATGAATTTATGAATTCTTGTCCAACTGG
ATGGATCTGGAGGATATCTTCCTTTATGAGGGAACCCCTCCCCAAAAAAA
CCCCCTATAAATTCCTCCCCGGTTTATGGCAATTACCCTCCCCCTTTTAT
ATCCCCTCAACCAATTTGCTTATACTCTGTAACCCCCCTATCCATATTTT
TTGTGCGGATATTCCCTTTTTCTTAAATAAGGGACATTACATCCCCCCCT
TTGGCTTATATAACACACCTCTTTTCCTCTTCTTTATAAATCCCCCCG
NCCCCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAGTCCTTCCAGTTGGAAA
TAGTGGTATTTAACCTGAACCCGGCTGCACTAGCATGGACTGCAGTGCCC
ACATTGGTTGGTGTGGAGCACATAGGGGAGCCTCCTCCCTGCAGGGACGA
AGCTTGAGCTTGTGGGAGCACAGACTGGGAACTGATGAGAGCCTTCTGCC
TAAGCCAGCACCACCCAGATTCCAGGTTCCTTCAGTATAAATGTATGTCC
CTTCTGTGCTAGGTAGTTCATGGTTCTTGGCCAGGTAAGGGAAACAGGTT
TTAAGTAGTTGGTCAACACAAAAGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTTTGTTTTGCCCTGCGGTTTACTTTACTGGCCGTTTGCCCGT
CTTTACATGCTATATTTTATTTTACCCTGTTTTTTCTATCTCGTTTCTTC
CATTTTTCTCTTTCTTAACCTCTTTTCCTTTCTTTTCCCCCTATTTTTTC
TTTTCTTTTACTCCCTTGTTTTTTCTACCCCCTTTTTTTCTTTTTTCTCC
CTTCTTCCCTTTTCCCCCTTCTTTTTTTTCACCTTTCTTTTTTCTCTCTT
CCCCCTTTTTATATTCCTTTCACTTTTTACCTTCTCTCTCCCCCTTTTTT
CCACTCATCCTCCTTCTTCTCCTCTTCTTCCTTTTTTTCCCCTGTCCTTC
TTTTTATTCCCCCCGCCTCTTTTATACCTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no347_m20.g1 MSMg01no347_m20.g1 CHROMAT_FILE:
MSMg01no347_m20.g1 PHD_FILE: MSMg01no347_m20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:38:53 2005
         (322 letters)



>mm_chr3_35746105_35746826
          Length = 722

 Score =  592 bits (306), Expect = e-173
 Identities = 318/322 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agagtccttccagttggaaatagtggtatttaacctgaacccggctgcactagcatggac 60
           |||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct: 201 agagtccttccagttggaaatagtggtatttaacctgaactcggccgcactagcatggac 260

                                                                       
Query: 61  tgcagtgcccacattggttggtgtggagcacataggggagcctcctccctgcagggacga 120
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgcagtgcccacatttgttggtgtggagcacataggggagcctcctccctgcagggacga 320

                                                                       
Query: 121 agcttgagcttgtgggagcacagactgggaactgatgagagccttctgcctaagccagca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agcttgagcttgtgggagcacagactgggaactgatgagagccttctgcctaagccagca 380

                                                                       
Query: 181 ccacccagattccaggttccttcagtataaatgtatgtcccttctgtgctaggtagttca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccacccagattccaggttccttcagtataaatgtatgtcccttctgtgctaggtagttca 440

                                                                       
Query: 241 tggttcttggccaggtaagggaaacaggttttaagtagttggtcaacacaaaagtgtgtg 300
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tggttcttggtcaggtaagggaaacaggttttaagtagttggtcaacacaaaagtgtgtg 500

                                 
Query: 301 tgtgtgtgtgtgtgtgtgtgtg 322
           ||||||||||||||||||||||
Sbjct: 501 tgtgtgtgtgtgtgtgtgtgtg 522


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 16
Number of successful extensions: 16
Number of sequences better than 10.0: 1
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 722
Length adjustment: 9
Effective length of query: 313
Effective length of database: 713
Effective search space:   223169
Effective search space used:   223169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)