BAC Information

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BAC

Clone NameMSMg01-348J13
Chromosome3 (Build37)
Map Location 64,779,751 - 64,780,188
singlet/doubletsinglet
Overlap genenone
Upstream geneGmps, LOC670032, EG56544, 4930518C23Rik, LOC380739, EG637004, EG667031, EG637053, LOC672951, EG639869, EG667060, EG667069, LOC100040918, 4933425M15Rik, LOC670110
Downstream geneKcnab1, Ssr3, EG433604, EG667093, LOC100041083, 4931440P22Rik, Tiparp, LOC545530, LOC100040978, EG624866, Ccnl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-348J13.T7 (MSMg01no348_j13.b1)MSMg01-348J13.TJ (MSMg01no348_j13.g1)
ACCAG460655AG460656
length732753
length of high quality
(start - end)
562 (38 - 599)529 (71 - 599)
definitionCHROMAT_FILE: MSMg01no348_j13.b1 PHD_FILE: MSMg01no348_j13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:39:56 2005CHROMAT_FILE: MSMg01no348_j13.g1 PHD_FILE: MSMg01no348_j13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:39:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCA
CCTGTACAAACAGAATGGCTGAAAAGCACCTGAAAAAATGCTCAGCATCC
TTAATCATCAGAGAAATGCAAATCAAAACAACCCTGAGATTCCATCTCAC
ACCAGTCAGAATGGCTAAGATCAAAACTTCAGGTGACAGCAGATGCTGGC
GAGGATGTGGAGAAAGAGGTATACTCTTTCATTGTTGGTGGGTTTGCAAG
CTTGTACAACCACTCTGGAAATCAATCTGGCGGTTCCTCAGAAAATTGGA
CATAGTACTACCAGAGGATCCAGTTATACCTCTCCTGGGCATATATCCAG
AAGATGTCCCAACTGGTAAGAAGGACACATGCTCTACTATGTTCATAGCA
GCCGTATTTATAATAGCCAGAAGCTGGAATAAAACCAGATGCCCCTCAAC
AGAGGAATGGATACGAAAAATGTGGTATATTTACACAATGGAGTACTACT
CAGCTATTAAAAAATGAATTTATGANATTCCTAGGCAAATGGTTGGACCT
GGAGGGCATCATCCTGAGTGAGGTAACACAATCACAAAAGAACTCAAATG
TTATGTACTCACTGATAAGTAGATATTAGCCCAGAAACTTAGTATACCCG
AGATATGAGAGACAATTTGTAAAACACATGAAACTGAAGAGGACGAAGAC
CAAAGTGTGGACACTTTGCCCCTTCTTAAAAT
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTAGATTTGTCACCCAAATCACAACTGAAT
GAAAGAAGATCACTCAAAGTTGATCACCACAGTATGAAAAATAATTGATC
TGAGCCTGCATGGTGATGCAGCAGCAGGGACAAGTTTGTGAGCCTAATGA
CCTGACTTTTGACTCCCCAGAACCCACAAAGGGGAAGGAGAGAACCAATT
CCACAAACTGCTCTCTGATCTCTGCATTCAGACTGTGGCAAATGCTAAGC
CGTGTTATATCCACACCATGTCACACTACACCGTGCCATGTCACAGAACA
CCACACTAAACAAGAATCAATTATATGCTTTTGACTTCTTCCCTTAGCTT
TGTGTACCTCCCATGGTATCCAGCACCCTTTATTCTGCTTTTCTGGGGCT
AGGGACCTACACTATAAACATCTCCCTAAAAGTCAGGTATCTCANAGGCT
TCCAATTCTCAGATACTGTAAATAATAGTCCCAGGCAGGAAAGAATTCAG
TCAGTCCTTCCCTTTGCTCTGAACTTCCTGGCAAACCATGCTTTTAACTC
AAGTTGGATATTGCATCCTTTAATACGGGAAAATAGAGTTGTTGATTTCT
ACTATGAACATAGAGTTCACCTTAAGGCGTGTTTTTTGGTTGAATTGGAA
TGGTGGAACATTTTATTGCCACTGTAACCCCTGTGGGATTTTTAAAAAAA
AAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no348_j13.g1 MSMg01no348_j13.g1 CHROMAT_FILE:
MSMg01no348_j13.g1 PHD_FILE: MSMg01no348_j13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:39:56 2005
         (529 letters)



>mm_chr3_64779260_64780188
          Length = 929

 Score =  826 bits (427), Expect = 0.0
 Identities = 435/438 (99%)
 Strand = Plus / Minus

                                                                       
Query: 92  ggtgatgcagcagcagggacaagtttgtgagcctaatgacctgacttttgactccccaga 151
           ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct: 929 ggtgatgcagcagcagggacaagtttgtgagcctaatgacctgacttttgagtctccaga 870

                                                                       
Query: 152 acccacaaaggggaaggagagaaccaattccacaaactgctctctgatctctgcattcag 211
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 869 acccacaaaggggaaggagagaaccaattccacaaactgctctctgatctctgcattcag 810

                                                                       
Query: 212 actgtggcaaatgctaagccgtgttatatccacaccatgtcacactacaccgtgccatgt 271
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 809 actgtggcaaatgctaagccgtgttatatccacaccatgtcacactacaccgtgccatgt 750

                                                                       
Query: 272 cacagaacaccacactaaacaagaatcaattatatgcttttgacttcttcccttagcttt 331
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 cacagaacaccacactaaacaagaatcaattatatgcttttgacttcttcccttagcttt 690

                                                                       
Query: 332 gtgtacctcccatggtatccagcaccctttattctgcttttctggggctagggacctaca 391
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 gtgtacctcccatggtatccagcaccctttattctgcttttctggggctagggacctaca 630

                                                                       
Query: 392 ctataaacatctccctaaaagtcaggtatctcanaggcttccaattctcagatactgtaa 451
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 629 ctataaacatctccctaaaagtcaggtatctcaaaggcttccaattctcagatactgtaa 570

                                                                       
Query: 452 ataatagtcccaggcaggaaagaattcagtcagtccttccctttgctctgaacttcctgg 511
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 ataatagtcccaggcaggaaagaattcagtcagtccttccctttgctctgaacttcctgg 510

                             
Query: 512 caaaccatgcttttaact 529
           ||||||||||||||||||
Sbjct: 509 caaaccatgcttttaact 492


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 529
Length of database: 929
Length adjustment: 10
Effective length of query: 519
Effective length of database: 919
Effective search space:   476961
Effective search space used:   476961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)