BAC Information

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BAC

Clone NameMSMg01-348M11
Chromosome3 (Build37)
Map Location 133,284,716 - 133,284,959
singlet/doubletsinglet
Overlap genenone
Upstream geneEG433653, LOC668857, Scye1, A630047E20Rik, LOC668858, Npnt, Gstcd, Ints12, 9130221D24Rik, Ppa2, E130014J05Rik
Downstream geneEG620205, LOC100039168, LOC668862, LOC100039199, Cxxc4, Ppia-ps3_1390.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-348M11.T7 (MSMg01no348_m11.b1)MSMg01-348M11.TJ (MSMg01no348_m11.g1)
ACCAG460794AG460795
length713740
length of high quality
(start - end)
550 (39 - 588)244 (64 - 307)
definitionCHROMAT_FILE: MSMg01no348_m11.b1 PHD_FILE: MSMg01no348_m11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:40:11 2005CHROMAT_FILE: MSMg01no348_m11.g1 PHD_FILE: MSMg01no348_m11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:40:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTT
TGTTTCCCTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTTCTGGAG
TCCACCTTCTTGAGTTCTTTATATATCTATATTGGATATTAGTCCCCTAT
CTGATTTAGGATTGGTAAAGATCCTTTCCCAATCTGTTGGTGGCATTTGT
GTCTTATTGACAGTGTCTTTTGCCTTACAGAAGCTTTATAATTTTATGAA
GTCCCATTTGTTGATTCTCGATCTTACAGCACAAGCCATTGAATATTCAG
GAATTTTTTTCCCTGTGCCCATATCTTTGAGGCTTATCCCCCCTTTCTCC
TCTATAAGTTTCAGTGTCTCTGGTTTTATGTGGAGCTCCTTGATCCACTT
AGACTTGAGCTTTGTACAAGTAGATAAAAATGGATCAATTCGCATTCTTG
TACATGATAAACACCAGTTGTGCCAGCACCATTTGTTGAAATGCTGTCTT
TTTTCCACTGGATGATTTTAGCTCCCTTGTCAAAGATCAAGTGACCATAG
GTGTGTGGTTTCATTTCTGGATCTTTAATTCTATTCCATTGCCCTACTTG
TCTGTCACTATACCAGTATCACGGAGTTTTTATTCGCATTGCTCTTGAAT
ATTACTTTATGTCCGGTATGCTTATTCCATCTGAGGCCCTTTTATCCCTG
ATATAACCTTTGT
AGTGTGTAGGNCTGGGAGGCGCCTTTTCAAAAAAATTTAGGTGAACTATA
GATTGCTCCACGGAATTCTTGAGAGATAATTGAACAGGATTTCAATATAT
GGCATGTTCTATTTTCTATGCTTTACCCAGCTTCTACGAACAGTTGTCTT
GTCTCACCACTTTGCCCAAGTGTTTTGTAAACTCTTTATATTTCTGGTCA
TTTTCAAGTAATACATTTCATGAACCCATTAAATGTTTTTGAGGTACTAC
TTCCTGGTATTTGCCTAAAACCCGTGTCTTAGTTGGGGTTTCTAATCCTG
AGGTGAATTTTTTTGGCCAAAAGCAACTTGGGGAGGAAAGGGTTTATTTC
CGCTTACAGTTCCTCATAACAGTTCATCATTGAAAGCAGTTAGGGCAAGG
ACTCACATAGGGCGGGGACCTGGAGGCAGGAGCTGATGCAGATGCCATGG
AGGGATGCTGCTTACTGGTTTGCTCCTCATGGCACGATCAATCTGCTTCC
TTATAGCACTCAGGACCAGCATCCCAGGAGTGACTCAACTCACAGTGCGT
TGTGTCCTCCTTCATCAATCACTAATTAAGAAGATTCCCTAGAGTATTGC
CGTACAGCCCTGGTCTTATGAAAATAATTCCTGAAGCTCGAATGTTCCTT
CTTTTCCAGCTGTCCTCTAAAATTGTGTTTACCTTGACCTCAAAATTTTT
TTCCCACCACCTGTCCCACTTTATTTCCTACCCTAATATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no348_m11.g1 MSMg01no348_m11.g1 CHROMAT_FILE:
MSMg01no348_m11.g1 PHD_FILE: MSMg01no348_m11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:40:11 2005
         (244 letters)



>mm_chr3_133284516_133285159
          Length = 644

 Score =  443 bits (229), Expect = e-129
 Identities = 241/245 (98%), Gaps = 2/245 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aattcttgagagataattgaacaggatttcaatatatggca-tgttctattttctatgct 59
           |||||||||||||||||||||||| |||||||||||||||| | ||||||||||||||||
Sbjct: 201 aattcttgagagataattgaacagtatttcaatatatggcact-ttctattttctatgct 259

                                                                       
Query: 60  ttacccagcttctacgaacagttgtcttgtctcaccactttgcccaagtgttttgtaaac 119
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ttacccagcttctacggacagttgtcttgtctcaccactttgcccaagtgttttgtaaac 319

                                                                       
Query: 120 tctttatatttctggtcattttcaagtaatacatttcatgaacccattaaatgtttttga 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tctttatatttctggtcattttcaagtaatacatttcatgaacccattaaatgtttttga 379

                                                                       
Query: 180 ggtactacttcctggtatttgcctaaaacccgtgtcttagttggggtttctaatcctgag 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ggtactacttcctggtatttgcctaaaacccgtgtcttagttggggtttctaatcctgag 439

                
Query: 240 gtgaa 244
           |||||
Sbjct: 440 gtgaa 444


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)