BAC Information

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BAC

Clone NameMSMg01-349A02
Chromosome3 (Build37)
Map Location 91,199,611 - 91,200,274
singlet/doubletsinglet
Overlap genenone
Upstream geneInts3, Npr1, LOC668141, Ilf2, Snapap, 2500003M10Rik, S100a1, S100a13, S100a14, S100a16, EG628324, S100a3, S100a4, S100a5, S100a6, S100a7a, S100a8, S100a9, LOC668165, LOC383949, Pglyrp4, LOC329706, EG545541, LOC635737, EG668174, LOC668179, LOC635756, 4930529C04Rik, 9130204L05Rik
Downstream geneLOC100042463, Pglyrp3, EG619750, Lor, A030004J04Rik, Sprr2a, LOC100042999, LOC545543, LOC100043005, LOC545545, LOC100042514, LOC619984, Sprr2b, Sprr2c, Sprr2d, Sprr2e, Sprr2f, Sprr2g, Sprr2h
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-349A02.T7 (MSMg01no349_a02.b1)MSMg01-349A02.TJ (MSMg01no349_a02.g1)
ACCAG460964AG460965
length712910
length of high quality
(start - end)		665 (46 - 710)---
definitionCHROMAT_FILE: MSMg01no349_a02.b1 PHD_FILE: MSMg01no349_a02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:40:30 2005CHROMAT_FILE: MSMg01no349_a02.g1 PHD_FILE: MSMg01no349_a02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:40:30 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCAGAATGTGTGAGGCTGGGAGATCCATCCAGGAAGATATGCCTA
GATAGATCCACAGTACCTGAGCAGAGGTTCTCAGCCATTTGCCAGAATGT
AGGTTAAAATTAATGCTTATTTTATTTTATTATCTAGTCTGAAAATGCTC
TAGTGTTATGGCCAAGCTATTTCTAAGTATAGTTTGAGTTTTAGTCTGAG
TCTTATTTCTGGGTTCATGGAGCTTAGAGGATGAGCCAGACCTATCTTCT
ACATTGTACTCAGGAAGTATGAGATGAAGTCAAGCATTTATTCCTAATGT
AGGCTATTTAACAAAACGGAGGCCAGTTGACAAATATTATACAGTACATA
TGCGTAGTTTTTTTTCTCTTCCTCTCACCTAACTCCTAATCTTTATTTTC
ATCTTTCCCATACCTAAGCTGTTTTAACTTTGGCATCCCTTCTTATACTC
CACTTTGAAACATGATCTTAATAACTTTCACAGTTTTCTCCCCAAAACAT
ACTTGTTCACCTCATAATGACCATTTCCAATTTTACATTGCCAACAGATA
GTCATTCCTGTTTTAAAAGGCATGCACATACAAAAGCACACACACAAGCA
TAGAGATACATATGCCAACAATTTTACGTTCTATGTATTATTTACTAGTT
TCCATTTTTTTC

ACAGGAGAGATGACACCAGAGAGCGCCCGAATCCGACTCAGCCTGGAGNA
GNNAAAAATTGCAAAAAGAGAAGGGANGNACGCANAAAAANAAGTAACAA
GAGCCGCCCATTTTCCCCCCTAAGCAGCCAGATACTCACTCACCATTAAT
TGTAACTTCAGAGAGGTGGGCCGCCCTCTAACCTATCCTCCCACCACACC
AATATGACAAAACTCGATAACAACTCTTATCCCCTTTTCACCTCCCTTTC
ACTCCCACTCCTTTTTGAACTCTGCCCTCAATCACCCCCCATTCCTCAAT
CATATCTTCCACCCCACCTTCCCACCTCACCACAACTTCTTCTATTATTT
CCGCACCACCTCTTAATTATTCTTGCCCTCTCCTACCTTTTTCTCTCCTC
CCTCCCCACCTCTAATCCGCTGCTTCTACTCCCTCTACCCCCGGCCCACT
TTTATATTATTACCCCTTATATCCCCTCTCCTTCCCTTCCGCCCACTTTC
CCATTCCATTACCGTAACCTACTCATCACTCACCTTTATCCTCTACTCAT
AATCCATCCCCCTCTCTTTTAACGTACTTCCCCTTCTAATTATTCCCACC
TACCTCCTCCTCCTCTCACCTCTCTAACTATCGACCCCAATTTTCTCACT
CCCACTCCTCCTCTACTCTACCCTCCTATCTACACCCATAACATTTCCCC
TTCGCGTCCCTTCCCTGGTTCCATTCATTATTTATGTTATATCCCTTAGA
TCTAAAATACACCTTCCTCGCCACCTCTCTATCTTTCTACCCCCCTAGCT
ATACATTCTGCCTATCCGCCTATCTATATATTTTCCGCACATTATTTCAC
CACAATATATCACAATTACGCTTCTAACCTATATCATCCAACACACCACA
TTATCACAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no349_a02.b1 MSMg01no349_a02.b1 CHROMAT_FILE:
MSMg01no349_a02.b1 PHD_FILE: MSMg01no349_a02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:40:30 2005
         (665 letters)



>mm_chr3_91199407_91200474
          Length = 1068

 Score = 1230 bits (636), Expect = 0.0
 Identities = 656/664 (98%), Gaps = 3/664 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcagaatgtgtgaggctgggagatccatccaggaagatatgcctagatagatcc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcagaatgtgtgaggctgggagatccatccaggaagatatgcctagatagatcc 264

                                                                       
Query: 65  acagtacctgagcagaggttctcagccatttgccagaatgtaggttaaaattaatgctta 124
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 265 acagtacctgagcagaggttctcagccatttgccagaatgtgggttaaaattaatgctta 324

                                                                       
Query: 125 ttttattttattatctagtctgaaaatgctctagtgttatggccaagctatttctaagta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttttattttattatctagtctgaaaatgctctagtgttatggccaagctatttctaagta 384

                                                                       
Query: 185 tagtttgagttttagtctgagtcttatttctgggttcatggagcttagaggatgagccag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tagtttgagttttagtctgagtcttatttctgggttcatggagcttagaggatgagccag 444

                                                                       
Query: 245 acctatcttctacattgtactcaggaagtatgagatgaagtcaagcatttattcctaatg 304
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 445 acctatcttctacattgtactcaggaagtatgagatgaagtcaagcatttatccctaatg 504

                                                                       
Query: 305 taggctatttaacaaaacggaggccagttgacaaatattatacagtacatatgcgtagtt 364
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 505 taggctatttaacaaaacggaggccagttgacaaatattatacagtacatatgcttagtt 564

                                                                       
Query: 365 tttttt---ctcttcctctcacctaactcctaatctttattttcatctttcccataccta 421
           ||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tttttttttctcttcctctcacctaactcctaatctttattttcatctttcccataccta 624

                                                                       
Query: 422 agctgttttaactttggcatcccttcttatactccactttgaaacatgatcttaataact 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 agctgttttaactttggcatcccttcttatactccactttgaaacatgatcttaataact 684

                                                                       
Query: 482 ttcacagttttctccccaaaacatacttgttcacctcataatgaccatttccaattttac 541
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ttgacagttttctccccaaaacatacttgttcacctcataatgaccatttccaattttac 744

                                                                       
Query: 542 attgccaacagatagtcattcctgttttaaaaggcatgcacatacaaaagcacacacaca 601
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 attgccaacagatagtcattcctgttttaaaaggcatgcacatacaaaagcacacacaca 804

                                                                       
Query: 602 agcatagagatacatatgccaacaattttacgttctatgtattatttactagtttccatt 661
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 805 agcatagagatacatatgccaacaattttatgttctatgtattatttactagtttccatt 864

               
Query: 662 tttt 665
           ||||
Sbjct: 865 tttt 868


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 665
Length of database: 1068
Length adjustment: 10
Effective length of query: 655
Effective length of database: 1058
Effective search space:   692990
Effective search space used:   692990
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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