Query= MSMg01no350_a20.b1 MSMg01no350_a20.b1 CHROMAT_FILE:
MSMg01no350_a20.b1 PHD_FILE: MSMg01no350_a20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:41:51 2005
(560 letters)
>mm_chr3_64887884_64888843
Length = 960
Score = 1011 bits (523), Expect = 0.0
Identities = 547/555 (98%)
Strand = Plus / Plus
Query: 6 gaattccacactccttcgccccttacccccataaaaacccctagttttcaagcctcgtgg 65
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattccacactcctaagccccttacccccataaaaacccctagttttcaagcctcgtgg 265
Query: 66 ccaacatctgttatctcctgtgtaggatacatgtcggcccggagctccgtaattaaacgt 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 ccaacatctgttatctcctgtgtaggatacatgtcggcccggagctccgtaattaaacgt 325
Query: 126 cctcatgtaattacatcaagatggtactctgttcgtgattcttgggtgcacgccgaatcg 185
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 326 cctcatgtaattacatcaagatggtagtctgttcgtgattcttgggtgcacgccgaatca 385
Query: 186 ggagttgagtgggggtttccccactaggttctatcaacagccttcagatgaagatgtaga 245
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 ggagttgagtgggggttttcccactaggttctatcaacagccttcagatgaagatgtaga 445
Query: 246 actctcagttcctcttagatgatccttcctagacactgtcttgatcctgccttgatgata 305
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 446 actctcagttcctcttagatgatccttcctagacactgccttgatcctgccttgatgata 505
Query: 306 atggactgaacttccaaacctgtaagccagctccaattaaatgttgtccttataagagtt 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 atggactgaacttccaaacctgtaagccagctccaattaaatgttgtccttataagagtt 565
Query: 366 gccttgttcatggtgtctgttaacagcagtaaaaccctaagacaggtcctaaacatggag 425
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 566 gccttgttcatggtgtctgttaacagcagtaaaaccctaagacaggtcctaaccatggag 625
Query: 426 ccccttgatgtcaacactgctagcttttctttctaattgcttctttcagatgaatagtga 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 ccccttgatgtcaacactgctagcttttctttctaattgcttctttcagatgaatagtga 685
Query: 486 cagtcctcaggtacagagccaccctttgtggactagagtacttatatctcccttcaggga 545
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 cagacctcaggtacagagccaccctttgtggactagagtacttatatctcccttcaggga 745
Query: 546 tgttcccaggacagt 560
|||||||||||||||
Sbjct: 746 tgttcccaggacagt 760
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 960
Length adjustment: 10
Effective length of query: 550
Effective length of database: 950
Effective search space: 522500
Effective search space used: 522500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no350_a20.g1 MSMg01no350_a20.g1 CHROMAT_FILE:
MSMg01no350_a20.g1 PHD_FILE: MSMg01no350_a20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:41:51 2005
(456 letters)
>mm_chr3_65072053_65072909
Length = 857
Score = 853 bits (441), Expect = 0.0
Identities = 453/457 (99%), Gaps = 1/457 (0%)
Strand = Plus / Minus
Query: 1 tgttgagtctgtgcatctctagttaacacctctagatgtcaggatttctcat-gggggaa 59
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 566 tgttgagtctgtgcatctctagttaacacctctagatgtcaggatttctcatggggggaa 507
Query: 60 acgagttcatgtaaagggggcattagtgggcacacatcctgctctctgccagctttcatg 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 acgagttcatgtaaagggggcattagtgggcacacatcctgctctctgccagctttcatg 447
Query: 120 cctcttgcctgggaatcagatagcctggttcctgctgggaatcactcctttcctcagcga 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 446 cctcttgcctgggaatcagatagcctggttcctgctgggaatcactcctttcctcagtga 387
Query: 180 gctatagacagagatggtcattcctgctatgccgcttgtctctggttttggcacctcagc 239
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 gctatagacagagatgctcattcctgctatgccgcttgtctctggttttggcacctcagc 327
Query: 240 ctcctcagagacccaaccatgggctgctgtccacctgcttgtccaggcattaataacgct 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 ctcctcagagacccaaccatgggctgctgtccacctgcttgtccaggcattaataacgct 267
Query: 300 gaaaactccttgctcctaacaacccatctcaatgtccctcttgaacttacatctgagact 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 gaaaactccttgctcctaacaacccatctcaatgtccctcttgaacttacatctgagact 207
Query: 360 ttcactatggagatgcaggatttaatgttttccatggtgacttttagtctcgctttggcc 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 ttcactatggagatgcaggatttaatgttttccatggtgacttttagtctcgctttggcc 147
Query: 420 caccttttccttgctctgacaccatttctctcttcta 456
||||||||||||||||||||||||| |||||||||||
Sbjct: 146 caccttttccttgctctgacaccatctctctcttcta 110
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 456
Length of database: 857
Length adjustment: 10
Effective length of query: 446
Effective length of database: 847
Effective search space: 377762
Effective search space used: 377762
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
