BAC Information

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BAC

Clone NameMSMg01-351A07
Chromosome3 (Build37)
Map Location 142,811,562 - 142,812,196
singlet/doubletsinglet
Overlap genenone
Upstream geneGabarapl2-ps3, Pdlim5, Gbp5, Gbp6, Gbp3, Gbp1, Gbp2, EG621605, Ccbl2, Gtf2b, Pkn2, LOC100040053, LOC100039883
Downstream gene1700001N15Rik, EG668889, EG621809, LOC100039938, LOC100039952
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-351A07.T7 (MSMg01no351_a07.b1)MSMg01-351A07.TJ (MSMg01no351_a07.g1)
ACCAG462491AG462492
length7431,714
length of high quality
(start - end)		639 (53 - 691)---
definitionCHROMAT_FILE: MSMg01no351_a07.b1 PHD_FILE: MSMg01no351_a07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:43:10 2005CHROMAT_FILE: MSMg01no351_a07.g1 PHD_FILE: MSMg01no351_a07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:43:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNNNNTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCAGGCTGTTCCATGCTAGCTCAGTAAACCATCATAATTA
AGCATAATGCATTTGATGCCAACCAGCAAAAATGTGACTATTACTTATTT
ATTGTGTAGCTTTGGAGAAGTTTCTTAGTTTCTCTAGGTTAGAAGGGGAC
AATAAAAACATCTATTTTAAGCCCTGCACCAAGCCCAGTTGGTCCTTTGG
GAAAATGAGTAAAACCTCCTCTGTTTTCAAACCATTTTACTGTTTACCAG
GAGGGAAAATACCTACATTGTTCCCTACAATCAACATAAGGCACAGCCTG
CAAACCATTCCTTCACAAATAAATGAGGACAACATTGACAATTAGAGAAT
TTCAAATGGTTTCAGTAACATTCTACTTCTATTATTATATGTAATCAATG
TTGACCTCTATACCATTTATGCAAATGGTTTAGGATTCATACTGCCATTT
CCAGATATGAAAGGAAAGTGTGTATGGTCCTATTTGTGAATGGTTCTGTG
TGTTCATGATCGTGTGCATAGTCATGTATGTATGCAGTCATGTATGTGTA
AGTGCATGCTTGCACATGCACATAGGGACTACAGAATTCAAGAGGAACCA
TTCATCTGTTTTTAAGGCAAGGTCTCTTACTGGGTCCCAGGGGTTACTGA
TTANGCTGCATTGGTTGGNCCAGGAGGTACGAGAATTCCGATN

NNNNNAACACGACCGCACACNNTNTNTCCNGCGCCNCTGCGCACATAGGG
ANNNGGGGNNGNNGGGGGGNCCACTACCCACACAAGCAACAGCGCGNNGG
AANGNNNNGANNGANGNAGAAGTGTACTCTCCCACACCACACACAACGCT
GCGCNCACATGCCCACNTATCAATAGCGCCTATGAAGANAACANACGCCA
GAGCAAAACACAAATATACGCATCATGCAATACAAGTAGACACCCTAATA
CCTCACGTACGAGAATGAGTGCCACAGATCAGCGTGCTGGGTCGCAGCAC
TCGAACTAGTTTATATGATGAGCTGAGATGAGGGCGTGTACACCGCGAAC
ATATATCGTTCAGTCATCCTCTCAGAGACGAATAACTGCCGTGGCAGCAA
TCGTCCTATCACTCGACAGTCGACACAGGACTCAAGAGNAGACCCACAAC
GAGACTACCGCTGCATAGCTACCTAGTCTGTACACATTCTATGATCTAGA
NAGCATCCGCACTATATATACCAACCACATGTCGTGTGACCACAATGATC
CCACAACAGCGTACCTCGGTCGTTCCCNTCTACAGCAACACGCTGACTGT
TATGACCAGCATCATCACCTCACTAGCTACACTTATCGTTCTTCTCNACN
TAGCACTCTGCTCCGNCAATCCGAGTTCAGTCAACGCTCGTACACTCATG
CGGGCTACGTCATCATGAATATCATNTGCTCACATACTACACTCACTCAA
TTGACACATCTCTCATACCACTCCGCTGAAGGGACACAACGCCCCTGATA
CCGTCATGTCCCGCTCTTGTAATCTACACAGTACCGGATATGTAGCATAC
ATCGCATGAACCAAACTATATAGTCGCATACTAGAAACCTCAACGATAGA
CACCTCACCTCATCTAGTCCTGTCTGCAACATATGAGCGATAAGTCGCAT
CTACAATCACATATCTCTGTCGCTCACCTCTTACTCCTACTCTCACGTCC
TCGTTCCACCGTACCACACTGCTCTCGTTTTNATTCTCACCTAACTCNAC
GAGACGCCTCTGTATAACTTACGCTGCTANATCTCATCGCATNGTATAGT
ATACCGCCAGTATGACGTGCTACCCTTACGCGTATTGCTNTGTACACTCA
CGTCTTACTCTGCTACAANATCTGCTCCGACTATATACCGCACGATGTCT
AGCTACGCTACCGTACACTNTNGACCCATATATCANCACGCTCAGCTGTA
TAGAGCATNAGCATCTCGCGCTGCTATNATCAGCGCTATACGTATGTCGA
TCTATATCACTCGATGACGCTTAGCTACCATACTANTATATAGTATACAG
CACCACACGTTGTGCTGTGTNAAAACTGCACCCGTCATNTGCATGTCACT
CCTGCGCTCGTATNCACGAGACTATCNCGTTCCTTATGTAACATCTGTCA
CGTGTCTATACCATCCTAGCTTACTATTCTACTATCCAGAGCACAGCTCT
NACTACTGCACATCGTCTACAATACCCATCACTCGCTCACACATTCTCTC
TCGTCGANCACNTAGTTACCGCAACTCAACTCTCACATCNCNACATCATA
TACTCGACTTCTCGCTACTTCACTACTGCTNTTATCGTCACTCGACGCNC
CTATTGCTGTGCGTCTATTGTCTGCTATCTGCTTATTGTCTAGTACACTA
CCNCNCTCATGTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no351_a07.b1 MSMg01no351_a07.b1 CHROMAT_FILE:
MSMg01no351_a07.b1 PHD_FILE: MSMg01no351_a07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:43:10 2005
         (639 letters)



>mm_chr3_142811358_142812396
          Length = 1039

 Score = 1205 bits (623), Expect = 0.0
 Identities = 632/635 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaggctgttccatgctagctcagtaaaccatcataattaagcataatgcatttga 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 839 gaattcaggctgttccatgctagctcagtaaaccatcataattaagcataatgcatttga 780

                                                                       
Query: 65  tgccaaccagcaaaaatgtgactattacttatttattgtgtagctttggagaagtttctt 124
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 779 tgccaaccagcaaaaatgtgactattacttgtttattgtgtagctttggagaagtttctt 720

                                                                       
Query: 125 agtttctctaggttagaaggggacaataaaaacatctattttaagccctgcaccaagccc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719 agtttctctaggttagaaggggacaataaaaacatctattttaagccctgcaccaagccc 660

                                                                       
Query: 185 agttggtcctttgggaaaatgagtaaaacctcctctgttttcaaaccattttactgttta 244
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 659 agttggtcctttgggaaaatgagtaaaacctactctgttttcaaaccattttactgttta 600

                                                                       
Query: 245 ccaggagggaaaatacctacattgttccctacaatcaacataaggcacagcctgcaaacc 304
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 599 ccaggagggaaaatacctacaatgttccctacaatcaacataaggcacagcctgcaaacc 540

                                                                       
Query: 305 attccttcacaaataaatgaggacaacattgacaattagagaatttcaaatggtttcagt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 attccttcacaaataaatgaggacaacattgacaattagagaatttcaaatggtttcagt 480

                                                                       
Query: 365 aacattctacttctattattatatgtaatcaatgttgacctctataccatttatgcaaat 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 aacattctacttctattattatatgtaatcaatgttgacctctataccatttatgcaaat 420

                                                                       
Query: 425 ggtttaggattcatactgccatttccagatatgaaaggaaagtgtgtatggtcctatttg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 ggtttaggattcatactgccatttccagatatgaaaggaaagtgtgtatggtcctatttg 360

                                                                       
Query: 485 tgaatggttctgtgtgttcatgatcgtgtgcatagtcatgtatgtatgcagtcatgtatg 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 tgaatggttctgtgtgttcatgatcgtgtgcatagtcatgtatgtatgcagtcatgtatg 300

                                                                       
Query: 545 tgtaagtgcatgcttgcacatgcacatagggactacagaattcaagaggaaccattcatc 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 tgtaagtgcatgcttgcacatgcacatagggactacagaattcaagaggaaccattcatc 240

                                              
Query: 605 tgtttttaaggcaaggtctcttactgggtcccagg 639
           |||||||||||||||||||||||||||||||||||
Sbjct: 239 tgtttttaaggcaaggtctcttactgggtcccagg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 639
Length of database: 1039
Length adjustment: 10
Effective length of query: 629
Effective length of database: 1029
Effective search space:   647241
Effective search space used:   647241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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