Query= MSMg01no351_c04.b1 MSMg01no351_c04.b1 CHROMAT_FILE:
MSMg01no351_c04.b1 PHD_FILE: MSMg01no351_c04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:43:19 2005
(588 letters)
>mm_chr3_29731866_29732853
Length = 988
Score = 1098 bits (568), Expect = 0.0
Identities = 580/584 (99%)
Strand = Plus / Plus
Query: 5 gaattcaaatctttgatcctcgttgggatctattttggcgtaatgtatgaggtagggatt 64
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaaatctttgatcctccttgggatctattttggcgtaatgtatgaggtagggatt 264
Query: 65 caactttattttctaccagatgtttgcccagttgttccaacatatttattaaatacatct 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 caactttattttctaccagatgtttgcccagttgttccaacatatttattaaatacatct 324
Query: 125 tttccttccatcaataattccatctttaccatatgtttaatgcttctctatatctatcca 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tttccttccatcaataattccatctttaccatatgtttaatgcttctctatatctatcca 384
Query: 185 tggacattgggggcagttagttaatcagcctgtctagtcttatgccagcatgacagtttt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tggacattgggggcagttagttaatcagcctgtctagtcttatgccagcatgacagtttt 444
Query: 245 aattatctgagcattgtaacatggtttcatatagggcccatgcattcctcatttgtcatt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aattatctgagcattgtaacatggtttcatatagggcccatgcattcctcatttgtcatt 504
Query: 305 tgtcagaattgttcttattctattttcatacttactttttctgcatggatttcagaaaca 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tgtcagaattgttcttattctattttcatacttactttttctgcatggatttcagaaaca 564
Query: 365 acaatctgcttccaaatagctcctcttaatattaaatgcatagactaattagggagaaat 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 acaatctgcttccaaatagctcctcttaatattaaatgcatagactaattagggagaaat 624
Query: 425 atttaaggtccatatctcactatgagacattaaaaactcatttaaattgtgcttttattt 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 atttaaggtccatatctcactatgagacattaaaaactcatttaaattgtgcttttattt 684
Query: 485 catagtattttctattttcttctcataggccttatgcttctcctgatagaagatacttcc 544
|||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 685 catagtatttcctattttcttctcataggccttatgcttctcctgctagaagatacttcc 744
Query: 545 atatttcacttctccttatattgcattataaaaaatgttgccta 588
|||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 745 atatttcacttccccttatattgcattataaaaaatgttgccta 788
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 988
Length adjustment: 10
Effective length of query: 578
Effective length of database: 978
Effective search space: 565284
Effective search space used: 565284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no351_c04.g1 MSMg01no351_c04.g1 CHROMAT_FILE:
MSMg01no351_c04.g1 PHD_FILE: MSMg01no351_c04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:43:19 2005
(482 letters)
>mm_chr3_29918992_29919872
Length = 881
Score = 729 bits (377), Expect = 0.0
Identities = 380/381 (99%), Gaps = 1/381 (0%)
Strand = Plus / Minus
Query: 1 caggcagagtgacaataattacatcagcactatcaacaatagtagtcactttgtattgac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 caggcagagtgacaataattacatcagcactatcaacaatagtagtcactttgtattgac 521
Query: 61 caaatgctgtgtcccatgcaagattctacgacttacgtttagtgcttcatacgattccct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 caaatgctgtgtcccatgcaagattctacgacttacgtttagtgcttcatacgattccct 461
Query: 121 cacactgggataggtctgcatttcaatgacaaggtcctgcagaaggttgggcagtagagt 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 460 cacactgggataggtctgcatttcaatgacaaggtcctgcagaaggttgggcagtaga-t 402
Query: 181 ctggacaatataaaacaaagaaatgagtcaagggtgtgcagaagctgaagatctgtgacc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 ctggacaatataaaacaaagaaatgagtcaagggtgtgcagaagctgaagatctgtgacc 342
Query: 241 agatcattacagtcattcagatggatggtcccaggcatccaagtttaggctcactaagac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 agatcattacagtcattcagatggatggtcccaggcatccaagtttaggctcactaagac 282
Query: 301 caagcacgcgtctggtcagcaaatacctctttagtacttgtttcagcttagaccctaggc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 caagcacgcgtctggtcagcaaatacctctttagtacttgtttcagcttagaccctaggc 222
Query: 361 aacaaggggtaaattatacct 381
|||||||||||||||||||||
Sbjct: 221 aacaaggggtaaattatacct 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 482
Length of database: 881
Length adjustment: 10
Effective length of query: 472
Effective length of database: 871
Effective search space: 411112
Effective search space used: 411112
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
