BAC Information

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BAC

Clone NameMSMg01-351H18
Chromosome3 (Build37)
Map Location 92,309,733 - 92,310,302
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042463, Pglyrp3, EG619750, Lor, A030004J04Rik, Sprr2a, LOC100042999, LOC545543, LOC100043005, LOC545545, LOC100042514, LOC619984, Sprr2b, Sprr2c, Sprr2d, Sprr2e, Sprr2f, Sprr2g, Sprr2h, Sprr2i, Sprr2j, LOC100043022, Sprr2k, Sprr1b, Sprr3, LOC100042575, Sprr1a, Sprr4
Downstream geneLOC100042581, Ivl, Smcp, Lce1a1, Lce1b, LOC620325, Lce1a2, Lce1c, Lce1d, LOC100043062, Lce1e, Lce1f, LOC668264, Lce1g, Lce1h, Lce1i, LOC545547, LOC631101, Kprp, Lce1l, 2310050C09Rik, Lce3a, Lce3b, Lce3c, LOC630994, 2310001H18Rik, Lce3f, Crct1, Lce1m, EG229571, Crnn, EG229574, EG668300, LOC668304, Flg, LOC100042701, Hrnr, Rptn, EG383891, Tchh, Tchhl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-351H18.T7 (MSMg01no351_h18.b1)MSMg01-351H18.TJ (MSMg01no351_h18.g1)
ACCAG462843AG462844
length740749
length of high quality
(start - end)		600 (54 - 653)570 (82 - 651)
definitionCHROMAT_FILE: MSMg01no351_h18.b1 PHD_FILE: MSMg01no351_h18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:43:44 2005CHROMAT_FILE: MSMg01no351_h18.g1 PHD_FILE: MSMg01no351_h18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:43:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTTTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCCTGATCTTTCCAAACTTTTATCATGAATGGGTGTTGG
ATCTTGTCAAATGCTTTTTCTGCATCTAACGAGATGATCATGTGGTTTTT
GTCTTTGAGTTTGTTTATATAATGGATTACATTGATGGATTTTCGTATAT
TAAACCATCCCTGCATCCCTGGAATAAAACCTACTTGGTCAGGATGGATG
ATTGCTTTAATGTGTTCTTGGATTCGGTTAGCGAGAATTTTATTGAGGAT
TTTTGCATCGATATTCATAAGAGAAATTGGTCTGAAGTTCTCTATCTTTG
TTGGGTCTTTCTGTGGTTTAGGTATCAGAGTAATAGTGGCTTCATAAAAT
GAGTTGGGTAGAGTACCTTCTACTTCTATTTTGTGAAATAGTTTGTGCAG
AATTGGAATTAGATCTTCTTTGAAGGTCTGGTAGAACTCTGCACTAAACC
CATCTGGTCCTGGGCTTTTTTTGGTTGGGAGACTATTAATAACTGCTTCT
ATTTCTTTAGGTGATATGGGACTGTTTAGATGGTTAACTTGATCCTGATT
CAACTTTGGTACCTGGTATCTGTCCAGAAATTTGTCCATTTCGTCCAGGT
TTTCCAGTTTTGTTGAGTATAGCCTTTTGTAGAANGATCTGATGGTGTTT
TGGATTTCTTCAAGATCTGTTGTTATGTCTCCCTTTTCAT

NNNNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTATTAATCATACTTAAT
CAGACATAGAGACCATTAATGCTCCAGGAGGGCTCAGGGAGGAGTTTACA
GCTCTCAAATTCTTACATTGAAAAATGGGAATACCAAGTCTCAGGAAAGT
TATAGAATGCCAAGATCTCACAGCCAGTGGAATTTGAGTAGCATAAAAGC
CTCCACGCACCCACTGGGAGTGGTTCTTCCTCATCTAGAACTCCAAGTAA
GTTCCACCACAAGAAAGAGAGACCAGAACCTCAGCTCCACTGGGCCTCCA
CCAGGCCAGTACTGGCAGTCTTCCCAGAGACACCGCACCCTCTCCATAGT
GCTTATGTTCCCATGCTGGCCATCTGTGAGCACACTATTGGAAGTAGCCC
TTTACCAAGCCCAAGACTTGCTTTTCCTCCCTTTCCACTTACAAAGCTAT
TACTGTCTCAGGTCTTCTAGAAGTACCTCATGTGGCATGAGAGATGGAGA
GGGAGGGGATAAAGTTCTGTCTCACTCTTCTCTCTATTTTTCAGGCTATC
ACTCTAAACACCTAACAATGGCAATGAAGCCTCTTATTTGCAAACATATC
AAGGGGTAGAATGATTCCTTACATTTACAAAAAGGTCAGAAGTTCTTCTT
GTAATTAGCATCCACCATACTGTTCGTTGATGGATTAAGAAATGGTGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no351_h18.g1 MSMg01no351_h18.g1 CHROMAT_FILE:
MSMg01no351_h18.g1 PHD_FILE: MSMg01no351_h18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:43:44 2005
         (570 letters)



>mm_chr3_92309533_92310502
          Length = 970

 Score = 1102 bits (570), Expect = 0.0
 Identities = 570/570 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   actattaatcatacttaatcagacatagagaccattaatgctccaggagggctcagggag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 770 actattaatcatacttaatcagacatagagaccattaatgctccaggagggctcagggag 711

                                                                       
Query: 61  gagtttacagctctcaaattcttacattgaaaaatgggaataccaagtctcaggaaagtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 gagtttacagctctcaaattcttacattgaaaaatgggaataccaagtctcaggaaagtt 651

                                                                       
Query: 121 atagaatgccaagatctcacagccagtggaatttgagtagcataaaagcctccacgcacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 atagaatgccaagatctcacagccagtggaatttgagtagcataaaagcctccacgcacc 591

                                                                       
Query: 181 cactgggagtggttcttcctcatctagaactccaagtaagttccaccacaagaaagagag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 cactgggagtggttcttcctcatctagaactccaagtaagttccaccacaagaaagagag 531

                                                                       
Query: 241 accagaacctcagctccactgggcctccaccaggccagtactggcagtcttcccagagac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 accagaacctcagctccactgggcctccaccaggccagtactggcagtcttcccagagac 471

                                                                       
Query: 301 accgcaccctctccatagtgcttatgttcccatgctggccatctgtgagcacactattgg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 accgcaccctctccatagtgcttatgttcccatgctggccatctgtgagcacactattgg 411

                                                                       
Query: 361 aagtagccctttaccaagcccaagacttgcttttcctccctttccacttacaaagctatt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 aagtagccctttaccaagcccaagacttgcttttcctccctttccacttacaaagctatt 351

                                                                       
Query: 421 actgtctcaggtcttctagaagtacctcatgtggcatgagagatggagagggaggggata 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 actgtctcaggtcttctagaagtacctcatgtggcatgagagatggagagggaggggata 291

                                                                       
Query: 481 aagttctgtctcactcttctctctatttttcaggctatcactctaaacacctaacaatgg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 aagttctgtctcactcttctctctatttttcaggctatcactctaaacacctaacaatgg 231

                                         
Query: 541 caatgaagcctcttatttgcaaacatatca 570
           ||||||||||||||||||||||||||||||
Sbjct: 230 caatgaagcctcttatttgcaaacatatca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 570
Length of database: 970
Length adjustment: 10
Effective length of query: 560
Effective length of database: 960
Effective search space:   537600
Effective search space used:   537600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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