Query= MSMg01no351_p10.b1 MSMg01no351_p10.b1 CHROMAT_FILE:
MSMg01no351_p10.b1 PHD_FILE: MSMg01no351_p10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:44:20 2005
(475 letters)
>mm_chr3_34904258_34905132
Length = 875
Score = 818 bits (423), Expect = 0.0
Identities = 458/470 (97%), Gaps = 1/470 (0%)
Strand = Plus / Minus
Query: 7 gaattcaaaaaaatac-cctacatggtattaagactttaccttgaaagctggatatagag 65
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 868 gaattcaaaaaaatacaactacatggtattaagactttaccttgaaagctggatatagag 809
Query: 66 acatgtgactttaatgccagcacttgggaggcagaagcaggcagatctctgagtttgagg 125
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 808 acatgtgactttaatgccagcacttgggaggcagaggcaggcagatctctgagtttgagg 749
Query: 126 tcagcctggtctacatagttagttctaggacagccagagatacttagtgagaccctgtct 185
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 748 tcagtctggtctacatagttagttctaggacagccagagatacttagtgggaccctgtct 689
Query: 186 caacacaacaaaacatgactggtcaaactccagggtgtttggtaaaagcagttcccatct 245
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 688 caacacaacaaaacatgactgatcaaactccagggtgtttggtaaaagcagttcccatct 629
Query: 246 aacagtcctgagaactgtccaccaagcttgcaacagattagagggatgcgccaggatgga 305
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 628 tacagtcctgagaactgtccaccaagtttgcaacagattagagggatgcgccaggatgga 569
Query: 306 cggaggcaggtttggaaatgcccagctgcagttgcaatcaataatgccctgaacccggat 365
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 568 tggaggcaggtttggaaatggccagctgcagttgcaatcaataatgccctgaacccggat 509
Query: 366 atgcattctcctangcgtgctgagtggggattccaccacgcatcccaaactgtgaaaatt 425
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 508 atgcattctcctaggcgtgctgagtggggattccaccgcgcatcccaaactgtgaaaatt 449
Query: 426 cctaagctatttataaatctcaactttggtttctcttaggtggttttctt 475
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 cctaagctatttataaatctcaactttggtttctcttaggtggttttctt 399
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 475
Length of database: 875
Length adjustment: 10
Effective length of query: 465
Effective length of database: 865
Effective search space: 402225
Effective search space used: 402225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no351_p10.g1 MSMg01no351_p10.g1 CHROMAT_FILE:
MSMg01no351_p10.g1 PHD_FILE: MSMg01no351_p10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:44:20 2005
(513 letters)
>mm_chr3_34734319_34735232
Length = 914
Score = 901 bits (466), Expect = 0.0
Identities = 502/514 (97%), Gaps = 1/514 (0%)
Strand = Plus / Plus
Query: 1 acagagatctgtctgctgttgtctcgtgagtgctgggattaaaggcagggggcctttctg 60
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 201 acagagatctgtctgctgttgtctcctgagtgctgggattaaaggcagggggcctttctg 260
Query: 61 ttgcttatctacccttctgggttatttatggacatgtcagaaaccacaaacttgtt-gta 119
||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 261 ttgattatctgcccttctgggttatttatggacatgtcagaaaccacaaacttgtttgta 320
Query: 120 cttatacttctcagaaggatctgggtcctgagtttcctccttcctaatgcaaatagcgga 179
||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct: 321 cttatacttctcagaaggatctgggtcctgagtttcccccttcctaacgcaaatagcgga 380
Query: 180 aggccatgtgtagcccctggctttgtatctttttcagtcagtgtctgaccttcctagaca 239
||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct: 381 aggccatgtgtagcccctggctttgtatcttcttcagtcagtgtctgaccttcatagaca 440
Query: 240 caggcatgtctcttggcctctagcagggcctgtgttttactgcagtagtttgtttcttaa 299
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 441 caggcatgtctcttggcctctagcagggcctgtgttttactgcagtagtttgcttcttaa 500
Query: 300 aggtacatctccgcttctgttgctaggcttactcacactggggagttaggctaaccgttg 359
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 501 aggtacatctccgcttctgttgctaggcttattcacactggggagttaggctaaccgttg 560
Query: 360 agagttagcacccaaactctgaaggattgtctggaatagtcatgggctttctctatccct 419
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 561 agagttagcacccaaactctgaaggattgtctggaatagtcacgggctttctctatccct 620
Query: 420 gcacattcctgatacactgcctgccttaggaattcctggatcttggttcacgtagccact 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 621 gcacattcctgatacactgcctgccttaggaattcctggatcttggttcacgtagcccct 680
Query: 480 cttcattcccacagcgtgtacagacactcaagct 513
||||||||||||||||||||||||||||||||||
Sbjct: 681 cttcattcccacagcgtgtacagacactcaagct 714
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 914
Length adjustment: 10
Effective length of query: 503
Effective length of database: 904
Effective search space: 454712
Effective search space used: 454712
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
