BAC Information

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BAC

Clone NameMSMg01-352A16
Chromosome3 (Build37)
Map Location 20,359,673 - 20,360,195
singlet/doubletsinglet
Overlap genenone
Upstream geneDnajc5b, EG620290, Trim55, Crh, LOC665002, LOC100039304, LOC100040237, 4632415L05Rik, Cp, Hps3, Hltf, Gyg, Cpa3, EG664965, LOC100040283, Cpb1, Agtr1b
Downstream geneEG665094
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-352A16.T7 (MSMg01no352_a16.b1)MSMg01-352A16.TJ (MSMg01no352_a16.g1)
ACCAG463268AG463269
length740597
length of high quality
(start - end)
525 (52 - 576)---
definitionCHROMAT_FILE: MSMg01no352_a16.b1 PHD_FILE: MSMg01no352_a16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:44:26 2005CHROMAT_FILE: MSMg01no352_a16.g1 PHD_FILE: MSMg01no352_a16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:44:26 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
TTTTTCTCTATATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTGTCTTACATGGAAGAAAGTCTGCTGACATCTAGATTAT
ATGAAGAATGGCTTGGGGTACTTGACCAGGTCAATGAAGAAGAGAAAGTA
GCCACTGTGCAGAGGTAATGGCTATTGAAAAACATCATCAAAGGAAAATA
TTTGCTTTCATACATTATATAATCACAGAAATACGAAAAACACTCACTGA
CAGCAAAAGGTGTCAATTGTTCACAAACATGCAAGACATCTTCAAAGAGA
AGTATGACTTGGGGGGGGGGTGTTGTTGGTCACAGTGGCCCATGCCTATA
AACTCAGCTTTATATTCCAATTAAGTTTGTCCCTCTTTTCTGTTTGGGGA
ACCATTTGAACCAATATTTCTAGTACAAACTGAAATATAGTTACTCTGTT
CCCTTTCTTCATATTTACAAACTGAGTAACCTTGTTTTAAAATAAATATT
TCTATGTTCAGTCTTTTAGAAAAACTACCAATAGCAAATGTTACTCTTCT
GGGACAACTTTTTCCGAATATTATAAATACATTGAGAGAACTTCTTCTAT
TAACATAACGACCGCTTATACTTTATCTATTACCACAGAGCTCAGCACCC
AATGCCTGATTATTTCCTGTAACAAATGATCACCCCATATAATCCCCCAC
GAGAACGGGCCCTATATCTTCAGTCCATCCCTCGACCATT
NCCTGGCCNNNNNNNNNNNNNNCCTATTTATGNNNTANCTCTGGNNGNNN
NCGCCTGGTTCGTCNNACTTTANGTGACNCTATANTTTTCCGCGNATTCT
TTGTTNCTCTGTCCCCTTTTTATGGNNTATTTGATTTTTGGATCCANCTC
CTTGNTCTTTGTTTTTTTGGTTTTTCCCCTTTAANNNTGGGGTGGGAAAT
TTTCCTTGTCTCGGGCCGCACGGGGAGCGGGGCCCGGGCGGGGCGGGGCG
GGCGCCGGGCGGGGGCGGGGGGCGGCCCCGGGCGGGGGTNNNNTTTTTTT
TTTTTTTNNTTTTTTTTTTTTTTTTTTTNNTTTTTTTCCTTNNTTTNTTT
TTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTNTTTTNNTTN
TTTTTNTTTTNTNNTTTTTTTTTTNTTTTTNTTTTTTTTTTNTNTTTTTT
TTTTCTTTCTTTTCTTTTCTTTTTTCTTTTCTTTTTCTTTTTTTTTTTTC
TTCCTTTCCTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTCCCTTTTTT
TCCTTTTTTTTTTTTTNTCTTTTTTTTTCCCCTTCCTTCCCTCCGCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no352_a16.b1 MSMg01no352_a16.b1 CHROMAT_FILE:
MSMg01no352_a16.b1 PHD_FILE: MSMg01no352_a16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:44:26 2005
         (525 letters)



>mm_chr3_20359471_20360395
          Length = 925

 Score =  924 bits (478), Expect = 0.0
 Identities = 513/528 (97%), Gaps = 11/528 (2%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctgtc----ttacatggaagaaagtctgctgacatctagattatatgaagaatg 59
           |||||||||||    |   |||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 ggaattctgtcaaaat---atggaagaaagtctgctgacatctagattatatgaagaatg 259

                                                                       
Query: 60  gcttggggtacttgaccaggtcaatgaagaagagaaagtagccactgtgcagaggtaatg 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 gcttggggtacttgaccaggtcaatgaagaagagaaagtagccactgtgcagaggtaatg 319

                                                                       
Query: 120 gctattgaaaaacatcatcaaagga-aaatatttgctttcatacattatataatcacaga 178
           ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct: 320 gctattgaaaaacatcatcaaaggagaaatatttgctttcatacattatat-atcacaga 378

                                                                       
Query: 179 aatacgaaaaacactcactgacagcaaaaggtgtcaattgttcacaaacatgcaagacat 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 aatacgaaaaacactcactgacagcaaaaggtgtcaattgttcacaaacatgcaagacat 438

                                                                       
Query: 239 cttcaaagagaagtatgactt-ggggggggggtgttgttggtcacagtggcccatgccta 297
           ||||||||||||||||||||| |||||||||| | || ||||||||||||||||||||||
Sbjct: 439 cttcaaagagaagtatgacttgggggggggggcgctggtggtcacagtggcccatgccta 498

                                                                       
Query: 298 taaactcagctttatattccaattaagtttgtccctcttttctgtttggggaaccatttg 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 taaactcagctttatattccaattaagtttgtccctcttttctgtttggggaaccatttg 558

                                                                       
Query: 358 aaccaatatttctagtacaaactgaaatatagttactctgttccctttcttcatatttac 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 aaccaatatttctagtacaaactgaaatatagttactctgttccctttcttcatatttac 618

                                                                       
Query: 418 aaactgagtaaccttgttttaaaataaatatttctatgttcagtcttttagaaaaactac 477
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 aaactgagtaaccttgttttaaaataaatatttctatgttcagtcttttagaaaaactac 678

                                                           
Query: 478 caatagcaaatgttactcttctgggacaactttttccgaatattataa 525
           |||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 679 caatagcaaatgttactcttctgggacaactttt-cagaatattataa 725


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 525
Length of database: 925
Length adjustment: 10
Effective length of query: 515
Effective length of database: 915
Effective search space:   471225
Effective search space used:   471225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)