NTCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTATCAGATCCCTAAAGAAGTCTTAATACCAATATTCTTCAAAC
TATTCTGCAAAATGATACAGAAGGAACAATACCCAATTCATTCTATGAAG
CCACAATTACGCTTATACCTAAACCACACAAAAACCAAAGAAAGAGAACA
TCAGACTAATCCTTCTTGTGAACATTGATACAAAAATACTCAATAAAATC
TTAATCCAAGAACACATCAAAATGATCATTCAACATGATCAAGTAGGCTT
CATCCCAGGGATGCAGGGATGGTTCAATATACAAAAATCTATCCACATAA
TCCACTACATAAACAAACTCAAAGAGAAAAACCACACGATCATTGCATTA
GATGCTGAAAAAGCACTTGACAAAATTCAGCATCCATTCATGTTAAAAGT
CTTGGGAAGGTCGGGAATTCAAGGCCCATACCTAAACATGGTAAAAGCAA
TCCACAGCAAACCAGTAACCAACATCAAACTAAATGGAGAGACACTCGAT
ACAATCCTACTAAAATTAAGCATAGACAAGGCTGCCCACTTTCTCCCTAT
CTATTCAATATAGTGAAGAACTAAAAATATCACTGTTTGCAGATGATATG
ATTGTACACTTAAGTGATCCCCTGAGACCTGGGTCCAAGAGTAAAAAGAA
AACCAATCATTCCTGAAGGGTCCCTTTTGTGAAGATGGCCAGAAACGCCC
CAATGGATTGTGGCCAGAG

NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTAATAGAGGAATCTTAAAAGGC
CAAGGATTTTGGAAAAGAAATTAGTGTGTCATGTTTCAATTTTTTTCTTC
TTTAACACGGCCAGTTTCAGTTAAAGATTAAATGAAATAATCCTGGTGAA
CAAAATGTATCAAGCCAAGAAAACAGTGGGGGAGTCTTCATGGAACAGTA
AGAAAAGTGAGCGCTTTCCCGTGTCTTGTACACAGAAGGGAAATGCTTGA
ACAACCTTATGCAGTGAGCAGAGAACAGTCTTTGGGAAATCACCTTAAGA
GGTTGAGTCTTTCAGCAAGTGTGCCTGCACTTCACGGTTCCCAACACTAA
CTGAATCTCCACAGGGTTCAGGCAGTGCCTCCCTTTCCTGTTTGAACAGC
TCTTTCTTGGGAGGAGCCTAGTTCTTATGAAGGGGCTGTACCCGCTCCAT
TGGAAAGCGCTGCTCACAGGACAAAAGGTTTTGCTTCTTTTCCGACTTTT
CAAAAACTTGTCAGCATGGTTGAAAACTGGAACACTGATTACCCCCTTAT
TTAACTTTTTACAAACTTTGGCGCCTCCTCCCCTATTGGACCCCCCATTC
CTCCCCTTTTCATTATTAACCCCCGTTTTCTCTCTTTCCTCATTTTGTCA
ACTTTTCTTCTTCTCTCCCTACTTGGTTTATATATAACCCTTCCTTATCT
CAACCCCCCCCTCATTCTCTCTCTTTGTTACCCCTTTTTATTTTCCCCCC
A

Query= MSMg01no352_h19.g1 MSMg01no352_h19.g1 CHROMAT_FILE:
MSMg01no352_h19.g1 PHD_FILE: MSMg01no352_h19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:45:03 2005
         (395 letters)



>mm_chr3_154551127_154551921
          Length = 795

 Score =  516 bits (267), Expect = e-151
 Identities = 391/505 (77%), Gaps = 111/505 (21%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttaatagaggaatcttaaaaggccaaggattttggaaaagaaattagtgtgtcatgtttc 60
           |||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct: 92  ttaatagaggaatcttaaaaggccaagggttttggaaaagaaattaatgtgtcatgtttc 151

                                                                       
Query: 61  aatttttttcttctttaacacggccagtttcagttaaagattaaatgaaataatcctggt 120
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 aa-ttttttcttctttaacacggccagtttcagttaaagattaaatgaaataatcctggt 210

                                                                       
Query: 121 gaacaaaatgtat----------------------------------------------- 133
           |||||||||||||                                               
Sbjct: 211 gaacaaaatgtatcaaggtcaagtctgatacatagtgtttccttcataaggtgataaaca 270

                                                                       
Query: 133 ------------------------------------------------------------ 133
                                                                       
Sbjct: 271 gtgggaatgacatcatctcgggaaacttaagtagttggtttctcatagacagattaggga 330

                                                                       
Query: 134 ---caagccaagaaaacagtgggggagtcttcatggaacagtaagaaaagtgagcgcttt 190
              ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 tgacaagccaagaaaagagtgggggagtcttcatggaacagtaagaaaagtgagcgcttt 390

                                                                       
Query: 191 cccgtgtcttgtacacagaagggaaatgcttgaacaaccttatgcagtgagcagagaaca 250
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 cccgtgtcttgtacacagaagggaaatgcttgaacaaccttatgcagtgagcagagaaca 450

                                                                       
Query: 251 gtctttgggaaatcaccttaagaggttgagtctttcagcaagtgtgcctgcacttcacgg 310
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 gtctttgggaaatcaccttaagaggttgagtctttcagcaagtgtgcctgcacttcacgg 510

                                                                       
Query: 311 ttcccaacactaactgaatctccacagggttcaggcagtgcctccctttcctgtttgaac 370
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 ttcccaacactaactgaatctccacagggttcaggcagtgcctccctttcctgtttgaac 570

                                    
Query: 371 agctctttcttgggaggagcctagt 395
           |||||||||||||||||||||||||
Sbjct: 571 agctctttcttgggaggagcctagt 595


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 395
Length of database: 795
Length adjustment: 9
Effective length of query: 386
Effective length of database: 786
Effective search space:   303396
Effective search space used:   303396
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)