BAC Information

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BAC

Clone NameMSMg01-352K16
Chromosome3 (Build37)
Map Location 9,577,561 - 9,577,790
singlet/doubletsinglet
Overlap geneZfp704
Upstream geneHey1, LOC100039504, Mrps28, Tpd52, LOC100041389, LOC667886, Zbtb10
Downstream genePag1, LOC621504, Fabp5, LOC100041480, Pmp2, Fabp9, Fabp4, 1700008G05Rik, Impa1, Slc10a5, Zfand1, Chmp4c, Snx16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-352K16.T7 (MSMg01no352_k16.b1)MSMg01-352K16.TJ (MSMg01no352_k16.g1)
ACCAG463737AG463738
length803786
length of high quality
(start - end)
217 (70 - 286)317 (79 - 395)
definitionCHROMAT_FILE: MSMg01no352_k16.b1 PHD_FILE: MSMg01no352_k16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:45:17 2005CHROMAT_FILE: MSMg01no352_k16.g1 PHD_FILE: MSMg01no352_k16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:45:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAATTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCATTAATTTTCAATTTGTTTTAAATTTCATTTGCTGTTTACTG
CCCAAAGAGATGATAAGTTTTATTTAAAATGAAGTGTGTATTGAAAGAGG
AAACTTTAGAAACCCACATTCTCTTTTACTTAATTTTGCTTCTAATGTGG
TCTGCAGGTTTTAAACTGGTATGTGAGGGGCTGAGACTCATGGATGTATC
TGAGTCTATTTCTAGTTCTGTGTGGCAATGGAGATCTAATCCAGAGTACA
TGGGTACTAGGCAAATTACTACTGAACAGGGTGGCCTGTTCTCTTAATTT
TGACTGATTGATCGATTGATTGATTGCAACAGGGCCTCACTGTGCATGCT
GACAGGTATTTACTACTCTGTATACCTTACGGCACCTACTTGTCTCGTCA
TCCCGTTGCCCCTTACTTCCGCAGTGCCCACGTCCCATATGCACCATCTC
AATCCTACTAATCCTCATTCCAATCACTTTTTTTATACTCAACTAAACAC
CTTATTCCGCATCTTGTCTCCCTTCTCTACCCCTCCCCTTATTTCCCTTC
ACCCATTGTCCCCCCTTATTTTACATCTGTCCTATCATCTGTCCCGACAT
GTTTTCCTACTCCCCTCTGTTCCTCCCTCTTTTCCCTCCCCTCTTTTTTT
TTTATACCCCCCCATTACCCCCCCCCCCCTTCCTTTTTTCCTTCCACACT
CCACCTAACTTTCATATTTCTGTCTCCCTTCCCCTTCGCCCCCTTTCCCT
TTT
NCGCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTGGTGTAATAGGTCTGCCTTTA
TATGTTACTTGACCTTTGTCCCTTACTGCTTTTAATATTCTTTCTTTGTT
TAGTGCATTTGGTGTTTTGATTATTATGTGACAGGAGGAATTTCTTTGTG
GTACAATCTATTTGGAGTTCTGTAGGCTTCTTGTATGTTTATAGATATCT
CTTTCTTTAGGATGGGAAGTTTTTCTCTATAAATTTGTTGACAATATTTA
CTAGCCTTTTAAGTTCAGAATCTTCATTCTCTTCTATACGTATTATCCTT
AGGTTTTATCTTCTCATTGCATCCTGAATTTCCTGGATGTTTTGCGTTAG
GAGCTTTATGTGTTTTGCATCCCCCTTGACTGCCCTGCCTCCGCTTTCCC
GTTATCTTTTGCCTTCTACCCCTTCTCTCTTTTCTCATGCATTTCTGCCT
CCGCAGCATCCTCTCTTTCTTCTCCGCCCTTTCATCTCCTTTCCCCCTTT
TCTTTCCTTTTCTTTCCCCTCTCCTCCCTCTTCCCTTCCTCTTTCCTCCT
CTTCCCTCCTTCTTACCTTTCTTCCCTTTTCCTTTTTGTCCTTTCCTTTT
ACCCTCCACTCTCCCATTATTTCCCCCCCCCCCTCCCTATTCTACTACTC
CCCCCTATTTCCCCTCCCTATTTTCTCCTCCCATCCTCCCCTCCTTCTCT
CTTTTTTCCCCCTTTCCTCTTCCGCCTTTCCTTCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no352_k16.b1 MSMg01no352_k16.b1 CHROMAT_FILE:
MSMg01no352_k16.b1 PHD_FILE: MSMg01no352_k16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:45:17 2005
         (217 letters)



>mm_chr3_9577459_9578075
          Length = 617

 Score =  364 bits (188), Expect = e-105
 Identities = 214/230 (93%), Gaps = 13/230 (5%)
 Strand = Plus / Minus

                                                                       
Query: 1   atttgttttaaatttcatttgctgtttactgcccaaagagatgataagttttatttaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 atttgttttaaatttcatttgctgtttactgcccaaagagatgataagttttatttaaaa 273

                                                                       
Query: 61  tgaagtgtgtattgaaagaggaaactttagaaacccacattctcttttacttaattttgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 tgaagtgtgtattgaaagaggaaactttagaaacccacattctcttttacttaattttgc 213

                                                                       
Query: 121 ttctaatgtggt------ctg-------caggttttaaactggtatgtgaggggctgaga 167
           ||||||||||||      |||       |||||||||||||||||||||| |||||||||
Sbjct: 212 ttctaatgtggttttaaactggtttaaacaggttttaaactggtatgtgacgggctgaga 153

                                                             
Query: 168 ctcatggatgtatctgagtctatttctagttctgtgtggcaatggagatc 217
           || |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 152 cttatggatgtatctgagtctatttctagttctgtgtgggaatggagatc 103


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 217
Length of database: 617
Length adjustment: 9
Effective length of query: 208
Effective length of database: 608
Effective search space:   126464
Effective search space used:   126464
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)